SCOPe 2.07: Domain d2wmkb1: 2wmk B:422-840

Lineage for d2wmkb1 (2wmk B:422-840)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.0: automated matches [191323] (1 protein)
   not a true family

6. Protein automated matches [190123] (156 species)
   not a true protein

7. Species Streptococcus pneumoniae [TaxId:406556] [311248] (13 PDB entries)

8. Domain d2wmkb1: 2wmk B:422-840 [304601]
   Other proteins in same PDB: d2wmka2, d2wmkb2
   automated match to d2wmfa1

Details for d2wmkb1

PDB Entry: 2wmk, 1.9 Å

PDB Description: crystal structure of the catalytic module of a family 98 glycoside hydrolase from streptococcus pneumoniae sp3-bs71 (sp3gh98) in complex with the a-lewisy pentasaccharide blood group antigen.

PDB Compounds: (B:) fucolectin-related protein

SCOPe Domain Sequences for d2wmkb1:

Sequence, based on SEQRES records:

>d2wmkb1 c.37.1.0 (B:422-840) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdklkesvsssriqikeitspefsstqarkeylnklypmn

Sequence, based on observed residues (ATOM records):

>d2wmkb1 c.37.1.0 (B:422-840) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdriqikeitspefsstqarkeylnklypmn

Timeline for d2wmkb1:

• d2wmkb1 first appeared in SCOPe 2.06
  
• d2wmkb1 appears in the current release, SCOPe 2.08