PDB entry 2wmk

View 2wmk on RCSB PDB site
Description: Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 (Sp3GH98) in complex with the A-LewisY pentasaccharide blood group antigen.
Class: hydrolase
Keywords: blood group, antigen, fucose utilization, hydrolase
Deposited on 2009-06-30, released 2009-07-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-11-28, with a file datestamp of 2012-11-23.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.16481
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fucolectin-related protein
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5LBQ0 (Start-605)
      • engineered mutation (160)
    Domains in SCOPe 2.07: d2wmka1, d2wmka2
  • Chain 'B':
    Compound: fucolectin-related protein
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5LBQ0 (Start-605)
      • engineered mutation (160)
    Domains in SCOPe 2.07: d2wmkb1, d2wmkb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2wmkA (A:)
mgsshhhhhhssglvprgshmasevdkrreinnehpllmmplyangeefnqgkytfwggd
tltgkwenipddlkpytviqlhpddlpkrdgaardfyehmleeaakyvnpktgknepipv
iltvytagnmpyytsahwlstswidkmyqkypnlhgifstanywiwandienkaadylkv
saknggyfiwaeqnngsaiekafgkngkiafqksvdkywknlifmfkntpaaegndstte
symkglwlsnhtyqwgglmdtwkwyetgkwklfasgnigksqgdrqwltepesmlgeeal
gvylnggvvynfehpaytygvnnkesllfsevikeffryviahpapskekvledtkvfih
gdysnkgngkffvnvntdreqtplymtgrynvipaipgvlktdklkesvsssriqikeit
spefsstqarkeylnklypmnyegdifaqkldnrwfvynykvnenvkqtgklkfnslemn
vefephtygiferisnglkvnlnnfrtnkdslwsnaqdanqakklpqltkkgaikwieeh
yikdtqfgekrvtkivlrgidklptihslsgtnnsydqpslnfdqknhmvtitinsngnl
efelhf

    Sequence, based on observed residues (ATOM records): (download) 
    >2wmkA (A:)
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdiqikeitspefsstqarkeylnklypmnyegdifaqkldnr
wfvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnlnnfrtnkdslws
naqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidklptihslsgtnn
sydqpslnfdqknhmvtitinsngnlefelhf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2wmkB (B:)
mgsshhhhhhssglvprgshmasevdkrreinnehpllmmplyangeefnqgkytfwggd
tltgkwenipddlkpytviqlhpddlpkrdgaardfyehmleeaakyvnpktgknepipv
iltvytagnmpyytsahwlstswidkmyqkypnlhgifstanywiwandienkaadylkv
saknggyfiwaeqnngsaiekafgkngkiafqksvdkywknlifmfkntpaaegndstte
symkglwlsnhtyqwgglmdtwkwyetgkwklfasgnigksqgdrqwltepesmlgeeal
gvylnggvvynfehpaytygvnnkesllfsevikeffryviahpapskekvledtkvfih
gdysnkgngkffvnvntdreqtplymtgrynvipaipgvlktdklkesvsssriqikeit
spefsstqarkeylnklypmnyegdifaqkldnrwfvynykvnenvkqtgklkfnslemn
vefephtygiferisnglkvnlnnfrtnkdslwsnaqdanqakklpqltkkgaikwieeh
yikdtqfgekrvtkivlrgidklptihslsgtnnsydqpslnfdqknhmvtitinsngnl
efelhf

    Sequence, based on observed residues (ATOM records): (download) 
    >2wmkB (B:)
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdriqikeitspefsstqarkeylnklypmnyegdifaqkldn
rwfvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnlnnfrtnkdslw
snaqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidklptihslsgtn
nsydqpslnfdqknhmvtitinsngnlefelhf