Lineage for d2wmkb1 (2wmk B:422-840)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2865683Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2865684Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families) (S)
    division into families based on beta-sheet topologies
  5. 2871581Family c.37.1.0: automated matches [191323] (1 protein)
    not a true family
  6. 2871582Protein automated matches [190123] (158 species)
    not a true protein
  7. 2872929Species Streptococcus pneumoniae [TaxId:406556] [311248] (13 PDB entries)
  8. 2872937Domain d2wmkb1: 2wmk B:422-840 [304601]
    Other proteins in same PDB: d2wmka2, d2wmkb2
    automated match to d2wmfa1

Details for d2wmkb1

PDB Entry: 2wmk (more details), 1.9 Å

PDB Description: crystal structure of the catalytic module of a family 98 glycoside hydrolase from streptococcus pneumoniae sp3-bs71 (sp3gh98) in complex with the a-lewisy pentasaccharide blood group antigen.
PDB Compounds: (B:) fucolectin-related protein

SCOPe Domain Sequences for d2wmkb1:

Sequence, based on SEQRES records: (download)

>d2wmkb1 c.37.1.0 (B:422-840) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdklkesvsssriqikeitspefsstqarkeylnklypmn

Sequence, based on observed residues (ATOM records): (download)

>d2wmkb1 c.37.1.0 (B:422-840) automated matches {Streptococcus pneumoniae [TaxId: 406556]}
vdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhpd
dlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstswi
dkmyqkypnlhgifstanywiwandienkaadylkvsaknggyfiwaeqnngsaiekafg
kngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwkw
yetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnnk
esllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtpl
ymtgrynvipaipgvlktdriqikeitspefsstqarkeylnklypmn

SCOPe Domain Coordinates for d2wmkb1:

Click to download the PDB-style file with coordinates for d2wmkb1.
(The format of our PDB-style files is described here.)

Timeline for d2wmkb1:

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Domains from same chain:
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d2wmkb2