SCOPe 2.06: Domain d1ddlc_: 1ddl C:

Lineage for d1ddlc_ (1ddl C:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.6: Tymoviridae-like VP [88641] (2 proteins)
   automatically mapped to Pfam PF00983

6. Protein Tymovirus coat protein [88642] (3 species)

7. Species DYMV (Desmodium yellow mottle tymovirus) [TaxId:70821] [49644] (1 PDB entry)

8. Domain d1ddlc_: 1ddl C: [23319]
   protein/RNA complex

Details for d1ddlc_

PDB Entry: 1ddl, 2.7 Å

PDB Description: desmodium yellow mottle tymovirus

PDB Compounds: (C:) desmodium yellow mottle virus

SCOPe Domain Sequences for d1ddlc_:

Sequence; same for both SEQRES and ATOM records:

>d1ddlc_ b.121.4.6 (C:) Tymovirus coat protein {DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]}
ntkpsllpppvgnpppvisypfqitlaslgtedaadsvsiasnsvlatytalyrhaqlkh
lkatihptymapkyptsvalvwvpanstatstqvldtygglhfciggsvnsvkpidvean
ltnlnpiikasttftdtpkllyyskaqataptsptcyltiqgqielsspllqass

Timeline for d1ddlc_:

• d1ddlc_ first appeared (with stable ids) in SCOP 1.55
  
• d1ddlc_ appears in SCOPe 2.05
  
• d1ddlc_ appears in SCOPe 2.07
  
• d1ddlc_ appears in the current release, SCOPe 2.08