SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.85: FucI/AraA N-terminal and middle domains [53742] (1 superfamily)
consists of two domains of similar topology, 3 layers (a/b/a) each
Domain 1 (1-173) has parallel beta-sheet of 5 strands, order 21345
Domain 2 (174-355) has parallel beta-sheet of 4 strands, order 2134

Superfamily c.85.1: FucI/AraA N-terminal and middle domains [53743] (3 families)
Family c.85.1.0: automated matches [227251] (1 protein)
not a true family
Protein automated matches [227031] (3 species)
not a true protein

Species:

Geobacillus kaustophilus [TaxId:235909] [275930] (5 PDB entries)
1. Domains for 4r1o:
  1. Domain d4r1oa1: 4r1o A:2-327 [275935]
    Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
    automated match to d2ajta2
  2. Domain d4r1ob1: 4r1o B:2-327 [275931]
    Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
    automated match to d2ajta2
  3. Domain d4r1oc1: 4r1o C:2-327 [275934]
    Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
    automated match to d2ajta2
  4. Domain d4r1od1: 4r1o D:2-327 [275938]
    Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
    automated match to d2ajta2
  5. Domain d4r1oe1: 4r1o E:3-327 [275942]
    Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
    automated match to d2ajta2
  6. Domain d4r1of1: 4r1o F:4-327 [275940]
    Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
    automated match to d2ajta2
2. Domains for 4r1p:
  1. Domain d4r1pa1: 4r1p A:3-327 [275956]
    Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
    automated match to d2ajta2
    complexed with mn
  2. Domain d4r1pb1: 4r1p B:3-327 [275968]
    Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
    automated match to d2ajta2
    complexed with mn
  3. Domain d4r1pc1: 4r1p C:2-327 [275962]
    Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
    automated match to d2ajta2
    complexed with mn
  4. Domain d4r1pd1: 4r1p D:3-327 [275970]
    Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
    automated match to d2ajta2
    complexed with mn
  5. Domain d4r1pe1: 4r1p E:2-327 [275966]
    Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
    automated match to d2ajta2
    complexed with mn
  6. Domain d4r1pf1: 4r1p F:5-327 [275964]
    Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
    automated match to d2ajta2
    complexed with mn
3. Domains for 4r1q:
  1. Domain d4r1qa1: 4r1q A:2-327 [275946]
    Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
    automated match to d2ajta2
    complexed with mn, sst
  2. Domain d4r1qb1: 4r1q B:3-327 [275944]
    Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
    automated match to d2ajta2
    complexed with mn, sst
  3. Domain d4r1qc1: 4r1q C:3-327 [275951]
    Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
    automated match to d2ajta2
    complexed with mn, sst
  4. Domain d4r1qd1: 4r1q D:1-327 [275954]
    Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
    automated match to d2ajta2
    complexed with mn, sst
  5. Domain d4r1qe1: 4r1q E:2-327 [275960]
    Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
    automated match to d2ajta2
    complexed with mn, sst
  6. Domain d4r1qf1: 4r1q F:2-327 [275958]
    Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
    automated match to d2ajta2
    complexed with mn, sst
4. Domains for 7cx7:
  1. Domain d7cx7c1: 7cx7 C:3-327 [420908]
    Other proteins in same PDB: d7cx7a2, d7cx7b2, d7cx7c2, d7cx7d2, d7cx7e2, d7cx7f2
    automated match to d4r1qa1
    complexed with gol, mn, mpd
  2. Domain d7cx7e1: 7cx7 E:3-327 [420974]
    Other proteins in same PDB: d7cx7a2, d7cx7b2, d7cx7c2, d7cx7d2, d7cx7e2, d7cx7f2
    automated match to d4r1qa1
    complexed with gol, mn, mpd
  3. Domain d7cx7f1: 7cx7 F:3-327 [421040]
    Other proteins in same PDB: d7cx7a2, d7cx7b2, d7cx7c2, d7cx7d2, d7cx7e2, d7cx7f2
    automated match to d4r1qa1
    complexed with gol, mn, mpd
  4. Domain d7cx7b1: 7cx7 B:3-327 [421088]
    Other proteins in same PDB: d7cx7a2, d7cx7b2, d7cx7c2, d7cx7d2, d7cx7e2, d7cx7f2
    automated match to d4r1qa1
    complexed with gol, mn, mpd
  5. Domain d7cx7a1: 7cx7 A:3-327 [421140]
    Other proteins in same PDB: d7cx7a2, d7cx7b2, d7cx7c2, d7cx7d2, d7cx7e2, d7cx7f2
    automated match to d4r1qa1
    complexed with gol, mn, mpd
  6. Domain d7cx7d1: 7cx7 D:3-327 [421216]
    Other proteins in same PDB: d7cx7a2, d7cx7b2, d7cx7c2, d7cx7d2, d7cx7e2, d7cx7f2
    automated match to d4r1qa1
    complexed with gol, mn, mpd
5. Domains for 7cyy:
  1. Domain d7cyye1: 7cyy E:3-327 [420940]
    Other proteins in same PDB: d7cyya2, d7cyyb2, d7cyyc2, d7cyyd2, d7cyye2, d7cyyf2
    automated match to d4r1qa1
    complexed with mn, mpd, rb0
  2. Domain d7cyyd1: 7cyy D:2-327 [421025]
    Other proteins in same PDB: d7cyya2, d7cyyb2, d7cyyc2, d7cyyd2, d7cyye2, d7cyyf2
    automated match to d4r1qa1
    complexed with mn, mpd, rb0
  3. Domain d7cyyf1: 7cyy F:3-327 [421083]
    Other proteins in same PDB: d7cyya2, d7cyyb2, d7cyyc2, d7cyyd2, d7cyye2, d7cyyf2
    automated match to d4r1qa1
    complexed with mn, mpd, rb0
  4. Domain d7cyyc1: 7cyy C:1-327 [421086]
    Other proteins in same PDB: d7cyya2, d7cyyb2, d7cyyc2, d7cyyd2, d7cyye2, d7cyyf2
    automated match to d4r1qa1
    complexed with mn, mpd, rb0
  5. Domain d7cyyb1: 7cyy B:1-327 [421233]
    Other proteins in same PDB: d7cyya2, d7cyyb2, d7cyyc2, d7cyyd2, d7cyye2, d7cyyf2
    automated match to d4r1qa1
    complexed with mn, mpd, rb0
  6. Domain d7cyya1: 7cyy A:1-327 [421355]
    Other proteins in same PDB: d7cyya2, d7cyyb2, d7cyyc2, d7cyyd2, d7cyye2, d7cyyf2
    automated match to d4r1qa1
    complexed with mn, mpd, rb0
Geobacillus pallidus [TaxId:33936] [225862] (3 PDB entries)
1. Domains for 3a9r:
  1. Domain d3a9ra1: 3a9r A:2-360 [208160]
    Other proteins in same PDB: d3a9ra2, d3a9rb2, d3a9rc2
    automated match to d1fuia2
    complexed with mn, mrd
  2. Domain d3a9rb1: 3a9r B:2-360 [208162]
    Other proteins in same PDB: d3a9ra2, d3a9rb2, d3a9rc2
    automated match to d1fuia2
    complexed with mn, mrd
  3. Domain d3a9rc1: 3a9r C:2-360 [208164]
    Other proteins in same PDB: d3a9ra2, d3a9rb2, d3a9rc2
    automated match to d1fuia2
    complexed with mn, mrd
2. Domains for 3a9s:
  1. Domain d3a9sa1: 3a9s A:2-360 [208166]
    Other proteins in same PDB: d3a9sa2, d3a9sb2, d3a9sc2
    automated match to d1fuia2
    complexed with gol, mn
  2. Domain d3a9sb1: 3a9s B:2-360 [208168]
    Other proteins in same PDB: d3a9sa2, d3a9sb2, d3a9sc2
    automated match to d1fuia2
    complexed with gol, mn
  3. Domain d3a9sc1: 3a9s C:2-360 [208170]
    Other proteins in same PDB: d3a9sa2, d3a9sb2, d3a9sc2
    automated match to d1fuia2
    complexed with gol, mn
3. Domains for 3a9t:
  1. Domain d3a9ta1: 3a9t A:2-360 [208172]
    Other proteins in same PDB: d3a9ta2, d3a9tb2, d3a9tc2
    automated match to d1fuia2
    complexed with foc, mn
  2. Domain d3a9tb1: 3a9t B:2-360 [208174]
    Other proteins in same PDB: d3a9ta2, d3a9tb2, d3a9tc2
    automated match to d1fuia2
    complexed with foc, mn
  3. Domain d3a9tc1: 3a9t C:2-360 [208176]
    Other proteins in same PDB: d3a9ta2, d3a9tb2, d3a9tc2
    automated match to d1fuia2
    complexed with foc, mn
Streptococcus pneumoniae [TaxId:170187] [229523] (3 PDB entries)
1. Domains for 4c20:
  1. Domain d4c20a1: 4c20 A:2-353 [229529]
    Other proteins in same PDB: d4c20a2, d4c20b2, d4c20b3
    automated match to d1fuia2
    complexed with edo, mn, so4, trs
  2. Domain d4c20b1: 4c20 B:2-353 [235849]
    Other proteins in same PDB: d4c20a2, d4c20b2, d4c20b3
    automated match to d4c20a1
    complexed with edo, mn, so4, trs
2. Domains for 4c21:
  1. Domain d4c21a1: 4c21 A:2-353 [229524]
    Other proteins in same PDB: d4c21a2, d4c21b2, d4c21b3
    automated match to d1fuia2
    complexed with edo, foc, mn
  2. Domain d4c21b1: 4c21 B:1-353 [235857]
    Other proteins in same PDB: d4c21a2, d4c21b2, d4c21b3
    automated match to d4c21a1
    complexed with edo, foc, mn
3. Domains for 4c22:
  1. Domain d4c22a1: 4c22 A:2-353 [229527]
    Other proteins in same PDB: d4c22a2, d4c22b2, d4c22b3
    automated match to d1fuia2
    complexed with cvu, edo, fuc, mn
  2. Domain d4c22b1: 4c22 B:2-353 [235855]
    Other proteins in same PDB: d4c22a2, d4c22b2, d4c22b3
    automated match to d4c22a1
    complexed with cvu, edo, fuc, mn

More info for Protein automated matches from c.85.1.0: automated matches

Timeline for Protein automated matches from c.85.1.0: automated matches:

Protein automated matches from c.85.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.85.1.0: automated matches appears in SCOPe 2.07