Lineage for d1gafl1 (1gaf L:1-109)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 288075Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (146 PDB entries)
  8. 288130Domain d1gafl1: 1gaf L:1-109 [20082]
    Other proteins in same PDB: d1gafh1, d1gafh2, d1gafl2
    part of humanized Fab 48G7
    complexed with npe

Details for d1gafl1

PDB Entry: 1gaf (more details), 1.95 Å

PDB Description: 48g7 hybridoma line fab complexed with hapten 5-(para-nitrophenyl phosphonate)-pentanoic acid
PDB Compounds: (L:)

SCOP Domain Sequences for d1gafl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1gafl1 b.1.1.1 (L:1-109) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4}
diqmtqspsslsaslgervsltcrasqeingylgwlqqkpdgtikrliyaastlhsgvpk
rfsgsrsgsdysltisslesedfadyyclqyasyprtfgggtkveikrt

SCOP Domain Coordinates for d1gafl1:

Click to download the PDB-style file with coordinates for d1gafl1.
(The format of our PDB-style files is described here.)

Timeline for d1gafl1:

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Domains from same chain:
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d1gafl2