Lineage for Family b.1.1.1: V set domains (antibody variable domain-like)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)

Proteins:

  1. 287098Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain [81942] (1 species)
  2. 287101Camelid IG heavy chain variable domain, VHh [88563] (2 species)
    1. 287102Species Camel (Camelus dromedarius) [TaxId:9838] [88564] (11 PDB entries)
    2. 287128Species Llama (Lama glama) [TaxId:9844] [88565] (6 PDB entries)
  3. 287136CD2, first domain [48740] (2 species)
    1. 287137Species Human (Homo sapiens) [TaxId:9606] [48741] (4 PDB entries)
    2. 287143Species Rat (Rattus norvegicus) [TaxId:10116] [48742] (5 PDB entries)
  4. 287156CD2-binding domain of CD58, N-terminal domain [48743] (1 species)
  5. 287162CD8 [48734] (2 species)
    1. 287163Species Human (Homo sapiens) [TaxId:9606] [48735] (2 PDB entries)
    2. 287167Species Mouse (Mus musculus) [TaxId:10090] [48736] (2 PDB entries)
  6. 287174CD80, N-terminal domain [48745] (1 species)
    a soluble form of b7-1
  7. 287179CD86 (b7-2), N-terminal domain [63635] (1 species)
  8. 287185Coxsackie virus and adenovirus receptor (Car), domain 1 [48730] (1 species)
  9. 287192HSV glycoprotein D [63637] (1 species)
  10. 287195Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
    1. 287196Species Engineered (including hybrid species) [88562] (24 PDB entries)
    2. 287235Species Hamster (Cricetulus griseus) [TaxId:10029] [88561] (1 PDB entry)
    3. 287238Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88544] (7 PDB entries)
    4. 287247Species Human (Homo sapiens), cluster 2.1 [TaxId:9606] [88545] (3 PDB entries)
    5. 287253Species Human (Homo sapiens), cluster 2.2 [TaxId:9606] [88546] (1 PDB entry)
    6. 287255Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (10 PDB entries)
    7. 287270Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (22 PDB entries)
    8. 287296Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] [88549] (14 PDB entries)
    9. 287316Species Mouse (Mus musculus), cluster 2.2 [TaxId:10090] [88550] (47 PDB entries)
    10. 287384Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88551] (28 PDB entries)
    11. 287419Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (118 PDB entries)
    12. 287572Species Mouse (Mus musculus), cluster 3.3 [TaxId:10090] [88553] (1 PDB entry)
    13. 287575Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88554] (29 PDB entries)
    14. 287615Species Mouse (Mus musculus), cluster 5 [TaxId:10090] [88555] (31 PDB entries)
    15. 287655Species Mouse (Mus musculus), cluster 6 [TaxId:10090] [88556] (10 PDB entries)
    16. 287668Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] [88557] (27 PDB entries)
    17. 287702Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] [88558] (17 PDB entries)
    18. 287721Species Mouse (Mus musculus), cluster 7.3 [TaxId:10090] [88559] (2 PDB entries)
    19. 287724Species Rat (Rattus norvegicus) [TaxId:10116] [88560] (7 PDB entries)
  11. 287738Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
    1. 287739Species Engineered (including hybrid species) [88533] (25 PDB entries)
    2. 287780Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88520] (16 PDB entries)
    3. 287813Species Human (Homo sapiens), cluster 2 [TaxId:9606] [88521] (10 PDB entries)
    4. 287829Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] [88522] (4 PDB entries)
    5. 287837Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (3 PDB entries)
    6. 287841Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (98 PDB entries)
    7. 287964Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (22 PDB entries)
    8. 287999Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (23 PDB entries)
    9. 288030Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88527] (12 PDB entries)
    10. 288047Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (16 PDB entries)
    11. 288067Species Mouse (Mus musculus), cluster 3.3 [TaxId:10090] [88529] (2 PDB entries)
    12. 288071Species Mouse (Mus musculus), cluster 3.4 [TaxId:10090] [88530] (3 PDB entries)
    13. 288075Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (146 PDB entries)
    14. 288262Species Rat (Rattus norvegicus) [TaxId:10116] [88532] (7 PDB entries)
  12. 288276Immunoglobulin light chain lambda variable domain, VL-lambda [88534] (8 species)
    VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
    1. 288277Species Hamster (Cricetulus griseus) [TaxId:10029] [88542] (1 PDB entry)
    2. 288280Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88535] (2 PDB entries)
    3. 288285Species Human (Homo sapiens), cluster 2 [TaxId:9606] [88536] (6 PDB entries)
    4. 288295Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] [88537] (1 PDB entry)
    5. 288297Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88538] (1 PDB entry)
    6. 288299Species Human (Homo sapiens), cluster 4 [TaxId:9606] [88539] (23 PDB entries)
    7. 288345Species Human (Homo sapiens), cluster 5 [TaxId:9606] [88540] (3 PDB entries)
    8. 288351Species Mouse (Mus musculus) [TaxId:10090] [88541] (25 PDB entries)
  13. 288384Immunoreceptor CTLA-4 (CD152), N-terminal fragment [48939] (2 species)
    1. 288385Species Human (Homo sapiens) [TaxId:9606] [48940] (3 PDB entries)
    2. 288391Species Mouse (Mus musculus) [TaxId:10090] [48941] (1 PDB entry)
  14. 288396Junction adhesion molecule, JAM, N-terminal domain [48747] (2 species)
    1. 288397Species Human (Homo sapiens) [TaxId:9606] [89180] (1 PDB entry)
    2. 288400Species Mouse (Mus musculus) [TaxId:10090] [48748] (1 PDB entry)
  15. 288402Myelin membrane adhesion molecule P0 [48728] (1 species)
  16. 288405Myelin oligodendrocyte glycoprotein (MOG) [89174] (1 species)
  17. 288410N-terminal domain of CD4 [48737] (2 species)
    1. 288411Species Human (Homo sapiens) [TaxId:9606] [48738] (13 PDB entries)
    2. 288434Species Rat (Rattus rattus) [TaxId:10117] [48739] (1 PDB entry)
  18. 288436N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) [89176] (1 species)
  19. 288441N-terminal domain of sialoadhesin [48732] (1 species)
  20. 288449NK cell activating receptor NKP44 [89178] (1 species)
    a triggering partner in natural cytotoxicity
  21. 288452T-cell antigen receptor [48933] (6 species)
    sequences may differ within each classified species
    1. 288453Species Human (Homo sapiens), alpha-chain [TaxId:9606] [48935] (10 PDB entries)
    2. 288464Species Human (Homo sapiens), beta-chain [TaxId:9606] [48937] (11 PDB entries)
    3. 288477Species Human (Homo sapiens), delta-chain [TaxId:9606] [48938] (2 PDB entries)
    4. 288484Species Human (Homo sapiens), gamma-chain [TaxId:9606] [63651] (1 PDB entry)
    5. 288489Species Mouse (Mus musculus), alpha-chain [TaxId:10090] [48934] (15 PDB entries)
    6. 288516Species Mouse (Mus musculus), beta-chain [TaxId:10090] [48936] (16 PDB entries)

More info for Family b.1.1.1: V set domains (antibody variable domain-like)

Timeline for Family b.1.1.1: V set domains (antibody variable domain-like):