Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2605913Fold d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
    contains mixed beta-sheet
  4. 2605914Superfamily d.165.1: Ribosome inactivating proteins (RIP) [56371] (3 families) (S)
  5. 2606292Family d.165.1.0: automated matches [191615] (1 protein)
    not a true family
  6. 2606293Protein automated matches [191124] (8 species)
    not a true protein

Species:

  1. 2606294Bitter gourd (Momordica charantia) [TaxId:3673] [312311] (16 PDB entries)
    1. Domain for 4z8s:
    2. Domain for 4z9w:
    3. Domain for 4za3:
    4. Domain for 4zbv:
    5. Domain for 4zfu:
    6. Domain for 4zfw:
    7. Domain for 4zfy:
    8. Domain for 4zgr:
    9. Domain for 4zlb:
    10. Domain for 6loq:
    11. Domain for 6lor:
    12. Domain for 6lov:
    13. Domain for 6low:
    14. Domain for 6loy:
    15. Domain for 6loz:
    16. Domain for 6lp0:
  2. 2606311Bougainvillea spectabilis [311189] (1 PDB entry)
  3. 2606313Burkholderia pseudomallei [TaxId:320372] [311316] (1 PDB entry)
  4. 2606318Common soapwort (Saponaria officinalis) [TaxId:3572] [225793] (5 PDB entries)
    1. Domains for 3hiq:
      1. 2606325Domain d3hiqa1: 3hiq A:1-257 [246496]
        Other proteins in same PDB: d3hiqa2, d3hiqb2
        automated match to d3hisa_
        mutant
      2. 2606326Domain d3hiqb1: 3hiq B:1-257 [246497]
        Other proteins in same PDB: d3hiqa2, d3hiqb2
        automated match to d3hisa_
        mutant
    2. Domains for 3his:
      1. 2606319Domain d3hisa_: 3his A: [211079]
        automated match to d1bryy_
      2. 2606320Domain d3hisb_: 3his B: [211080]
        automated match to d1bryy_
    3. Domains for 3hit:
      1. 2606327Domain d3hita_: 3hit A: [211081]
        automated match to d1bryy_
        complexed with dyn
      2. 2606328Domain d3hitb_: 3hit B: [211082]
        automated match to d1bryy_
        complexed with dyn
    4. Domains for 3hiv:
      1. 2606323Domain d3hiva_: 3hiv A: [211083]
        automated match to d1bryy_
        complexed with txn
      2. 2606324Domain d3hivb_: 3hiv B: [211084]
        automated match to d1bryy_
        complexed with txn
    5. Domains for 3hiw:
      1. 2606321Domain d3hiwa_: 3hiw A: [211085]
        automated match to d1bryy_
        complexed with c2x
      2. 2606322Domain d3hiwb_: 3hiw B: [211086]
        automated match to d1bryy_
        complexed with c2x
  5. 2606329Gelonium multiflorum [TaxId:3979] [189202] (2 PDB entries)
    1. Domains for 3ktz:
      1. 2606332Domain d3ktza_: 3ktz A: [179698]
        automated match to d1uq5a_
        complexed with nag
      2. 2606333Domain d3ktzb_: 3ktz B: [179699]
        automated match to d1uq5a_
        complexed with nag
    2. Domains for 3ku0:
      1. 2606330Domain d3ku0a_: 3ku0 A: [179700]
        automated match to d1uq5a_
        complexed with ade, nag
      2. 2606331Domain d3ku0b_: 3ku0 B: [179701]
        automated match to d1uq5a_
        complexed with ade, nag
  6. 2606334Iris hollandica [TaxId:35876] [226141] (1 PDB entry)
  7. 2606337Lychnis chalcedonica [TaxId:39855] [230738] (1 PDB entry)
  8. 2606339Marinobacter subterrani [TaxId:1658765] [374296] (8 PDB entries)
    1. Domains for 6phr:
      1. 2606344Domain d6phra1: 6phr A:1-343 [374350]
        Other proteins in same PDB: d6phra2, d6phrb2
        automated match to d4zura_
        complexed with k, mes, mg, ss9, zn
      2. 2606345Domain d6phrb1: 6phr B:1-343 [374432]
        Other proteins in same PDB: d6phra2, d6phrb2
        automated match to d4zura_
        complexed with k, mes, mg, ss9, zn
    2. Domains for 6pht:
      1. 2606354Domain d6phta1: 6pht A:1-343 [374326]
        Other proteins in same PDB: d6phta2, d6phtb2, d6phtc2, d6phtd2
        automated match to d4zura_
        complexed with k, mg, okp, zn
      2. 2606355Domain d6phtb1: 6pht B:1-342 [374328]
        Other proteins in same PDB: d6phta2, d6phtb2, d6phtc2, d6phtd2
        automated match to d4zura_
        complexed with k, mg, okp, zn
      3. 2606356Domain d6phtc1: 6pht C:1-342 [374461]
        Other proteins in same PDB: d6phta2, d6phtb2, d6phtc2, d6phtd2
        automated match to d4zura_
        complexed with k, mg, okp, zn
      4. 2606357Domain d6phtd1: 6pht D:1-342 [374302]
        Other proteins in same PDB: d6phta2, d6phtb2, d6phtc2, d6phtd2
        automated match to d4zura_
        complexed with k, mg, okp, zn
    3. Domains for 6phz:
      1. 2606358Domain d6phza1: 6phz A:1-342 [374442]
        Other proteins in same PDB: d6phza2, d6phzb2
        automated match to d4zura_
        complexed with fks, k, mg, zn
      2. 2606359Domain d6phzb1: 6phz B:1-342 [374380]
        Other proteins in same PDB: d6phza2, d6phzb2
        automated match to d4zura_
        complexed with fks, k, mg, zn
    4. Domains for 6pi1:
      1. 2606346Domain d6pi1a1: 6pi1 A:1-343 [374385]
        Other proteins in same PDB: d6pi1a2, d6pi1b2, d6pi1c2, d6pi1d2
        automated match to d4zura_
        complexed with b3n, k, mg, zn
      2. 2606347Domain d6pi1b1: 6pi1 B:1-343 [374315]
        Other proteins in same PDB: d6pi1a2, d6pi1b2, d6pi1c2, d6pi1d2
        automated match to d4zura_
        complexed with b3n, k, mg, zn
      3. 2606348Domain d6pi1c1: 6pi1 C:1-343 [374354]
        Other proteins in same PDB: d6pi1a2, d6pi1b2, d6pi1c2, d6pi1d2
        automated match to d4zura_
        complexed with b3n, k, mg, zn
      4. 2606349Domain d6pi1d1: 6pi1 D:1-343 [374422]
        Other proteins in same PDB: d6pi1a2, d6pi1b2, d6pi1c2, d6pi1d2
        automated match to d4zura_
        complexed with b3n, k, mg, zn
    5. Domains for 6pi8:
      1. 2606342Domain d6pi8a1: 6pi8 A:1-343 [374323]
        Other proteins in same PDB: d6pi8a2, d6pi8b2
        automated match to d4zura_
        complexed with act, edo, k, mg, zn
      2. 2606343Domain d6pi8b1: 6pi8 B:1-343 [374369]
        Other proteins in same PDB: d6pi8a2, d6pi8b2
        automated match to d4zura_
        complexed with act, edo, k, mg, zn
    6. Domains for 6pia:
      1. 2606350Domain d6piaa1: 6pia A:1-343 [374306]
        Other proteins in same PDB: d6piaa2, d6piab2, d6piac2, d6piad2
        automated match to d4zura_
        complexed with edo, k, mg, xs6, zn
      2. 2606351Domain d6piab1: 6pia B:1-343 [374297]
        Other proteins in same PDB: d6piaa2, d6piab2, d6piac2, d6piad2
        automated match to d4zura_
        complexed with edo, k, mg, xs6, zn
      3. 2606352Domain d6piac1: 6pia C:1-343 [374387]
        Other proteins in same PDB: d6piaa2, d6piab2, d6piac2, d6piad2
        automated match to d4zura_
        complexed with edo, k, mg, xs6, zn
      4. 2606353Domain d6piad1: 6pia D:1-343 [374309]
        Other proteins in same PDB: d6piaa2, d6piab2, d6piac2, d6piad2
        automated match to d4zura_
        complexed with edo, k, mg, xs6, zn
    7. Domains for 6pic:
      1. 2606360Domain d6pica1: 6pic A:1-342 [374312]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      2. 2606361Domain d6picb1: 6pic B:1-343 [374503]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      3. 2606362Domain d6picc1: 6pic C:1-343 [374304]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      4. 2606363Domain d6picd1: 6pic D:1-343 [374317]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      5. 2606364Domain d6pice1: 6pic E:1-343 [374342]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      6. 2606365Domain d6picf1: 6pic F:1-343 [374344]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      7. 2606366Domain d6picg1: 6pic G:1-343 [374352]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
      8. 2606367Domain d6pich1: 6pic H:1-343 [374405]
        Other proteins in same PDB: d6pica2, d6picb2, d6picc2, d6picd2, d6pice2, d6picf2, d6picg2, d6pich2
        automated match to d4zura_
        complexed with 6xa, k, mg, zn
    8. Domains for 6pid:
      1. 2606340Domain d6pida1: 6pid A:1-343 [374319]
        Other proteins in same PDB: d6pida2, d6pidb2
        automated match to d4zura_
        complexed with k, mg, oks, zn
      2. 2606341Domain d6pidb1: 6pid B:1-343 [374470]
        Other proteins in same PDB: d6pida2, d6pidb2
        automated match to d4zura_
        complexed with k, mg, oks, zn

More info for Protein automated matches from d.165.1.0: automated matches

Timeline for Protein automated matches from d.165.1.0: automated matches: