Species:

1. African clawed frog (Xenopus laevis) [TaxId:8355] [225308] (1 PDB entry)

   • Domain for 2nog:

     • Domain d2nogb2: 2nog B:828-895 [205126] Other proteins in same PDB: d2noga1, d2nogb1 automated match to d1ofcx1 complexed with mg

2. Bacillus cereus [TaxId:1396] [231498] (1 PDB entry)

   • Domains for 2wv1:

     1. Domain d2wv1a1: 2wv1 A:4-76 [231499] Other proteins in same PDB: d2wv1a2, d2wv1b2 automated match to d2fx0a1 complexed with no3; mutant

     2. Domain d2wv1b1: 2wv1 B:4-76 [231501] Other proteins in same PDB: d2wv1a2, d2wv1b2 automated match to d2fx0a1 complexed with no3; mutant

3. Escherichia coli [TaxId:562] [226228] (4 PDB entries)

   1. Domain for 2xrl:

      • Domain d2xrla1: 2xrl A:2-67 [207325] Other proteins in same PDB: d2xrla2 automated match to d1qpia1 complexed with cl, dxt, mg

   2. Domain for 4ac0:

      • Domain d4ac0a1: 4ac0 A:2-67 [218776] Other proteins in same PDB: d4ac0a2 automated match to d1qpia1 complexed with mg, miy, po4

   3. Domain for 4b1r:

      • Domain d4b1ra1: 4b1r A:2-67 [219251] Other proteins in same PDB: d4b1ra2 automated match to d1qpia1 complexed with cl, itc; mutant

   4. Domain for 4b3a:

      • Domain d4b3aa1: 4b3a A:2-67 [219259] Other proteins in same PDB: d4b3aa2 automated match to d1qpia1 complexed with cl, mg, tac; mutant

4. Golden hamster (Mesocricetus auratus) [TaxId:10036] [187780] (1 PDB entry)

   • Domains for 2h1k:

     1. Domain d2h1ka_: 2h1k A: [164912] automated match to d1ahdp_ protein/DNA complex

     2. Domain d2h1kb_: 2h1k B: [164913] automated match to d1ahdp_ protein/DNA complex

5. Human (Homo sapiens) [TaxId:9606] [189258] (1 PDB entry)

   • Domain for 3a03:

     • Domain d3a03a_: 3a03 A: [171621] automated match to d2e1oa1 complexed with na, so4

6. Mouse (Mus musculus) [TaxId:10090] [188321] (2 PDB entries)

   1. Domains for 2vi6:

      1. Domain d2vi6a_: 2vi6 A: [168625] automated match to d1ftta_

      2. Domain d2vi6b_: 2vi6 B: [168626] automated match to d1ftta_

      3. Domain d2vi6c_: 2vi6 C: [168627] automated match to d1ftta_

      4. Domain d2vi6d_: 2vi6 D: [168628] automated match to d1ftta_

      5. Domain d2vi6e_: 2vi6 E: [168629] automated match to d1ftta_

      6. Domain d2vi6f_: 2vi6 F: [168630] automated match to d1ftta_

      7. Domain d2vi6g_: 2vi6 G: [168631] automated match to d1ftta_

      8. Domain d2vi6h_: 2vi6 H: [168632] automated match to d1ftta_

   2. Domain for 2xsd:

      • Domain d2xsdc2: 2xsd C:343-397 [207328] Other proteins in same PDB: d2xsdc1 automated match to d1octc1 protein/DNA complex; complexed with edo

7. Mycobacterium tuberculosis [TaxId:1773] [232223] (4 PDB entries)

   1. Domain for 3g1l:

      • Domain d3g1la1: 3g1l A:22-94 [232224] Other proteins in same PDB: d3g1la2 automated match to d1t56a1 protein/DNA complex; complexed with rf2

   2. Domain for 3g1m:

      • Domain d3g1ma1: 3g1m A:22-94 [232225] Other proteins in same PDB: d3g1ma2 automated match to d1t56a1 protein/DNA complex; complexed with rf3

   3. Domain for 3g1o:

      • Domain d3g1oa1: 3g1o A:22-94 [232230] Other proteins in same PDB: d3g1oa2 automated match to d1t56a1 protein/DNA complex; complexed with rf1

   4. Domain for 3sfi:

      • Domain d3sfia1: 3sfi A:22-94 [238507] Other proteins in same PDB: d3sfia2 automated match to d3g1ma1 protein/DNA complex; complexed with 3sf

8. Pasteurella multocida [TaxId:747] [225420] (1 PDB entry)

   • Domain for 2vpr:

     • Domain d2vpra1: 2vpr A:2-67 [206411] Other proteins in same PDB: d2vpra2 automated match to d1qpia1 protein/DNA complex; complexed with mg, so4, tdc

9. Rattus norvegicus [TaxId:10116] [230637] (1 PDB entry)

   • Domains for 2d5v:

     1. Domain d2d5va2: 2d5v A:100-155 [230638] Other proteins in same PDB: d2d5va1, d2d5vb1 automated match to d1s7ea1 protein/DNA complex; complexed with act, gol

     2. Domain d2d5vb2: 2d5v B:100-155 [230640] Other proteins in same PDB: d2d5va1, d2d5vb1 automated match to d1s7ea1

10. Saccharomyces cerevisiae [TaxId:559292] [233791] (1 PDB entry)

    • Domain for 3ukg:

      • Domain d3ukga1: 3ukg A:360-445 [233792] Other proteins in same PDB: d3ukga2 automated match to d1igna1 protein/DNA complex; complexed with ca

11. Trichomonas vaginalis [TaxId:5722] [233124] (2 PDB entries)

    1. Domains for 3osf:

       1. Domain d3osfa1: 3osf A:48-96 [233125] automated match to d1h88c1 protein/DNA complex; complexed with ipa

       2. Domain d3osfa2: 3osf A:97-150 [233126] automated match to d1gv2a2 protein/DNA complex; complexed with ipa

       3. Domain d3osfd1: 3osf D:48-96 [233127] automated match to d1h88c1 protein/DNA complex; complexed with ipa

       4. Domain d3osfd2: 3osf D:97-150 [233128] automated match to d1gv2a2 protein/DNA complex; complexed with ipa

    2. Domains for 3osg:

       1. Domain d3osga1: 3osg A:40-96 [233129] automated match to d1h88c1 protein/DNA complex

       2. Domain d3osga2: 3osg A:97-150 [233130] automated match to d1gv2a2 protein/DNA complex

       3. Domain d3osgd1: 3osg D:48-96 [233131] automated match to d1h88c1 protein/DNA complex

       4. Domain d3osgd2: 3osg D:97-150 [233132] automated match to d1gv2a2 protein/DNA complex

More info for Protein automated matches from a.4.1.0: automated matches

Timeline for Protein automated matches from a.4.1.0: automated matches:

• Protein automated matches from a.4.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from a.4.1.0: automated matches appears in SCOPe 2.02
  
• Protein automated matches from a.4.1.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from a.4.1.0: automated matches appears in the current release, SCOPe 2.08