Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1981148Superfamily a.4.1: Homeodomain-like [46689] (20 families) (S)
    consists only of helices
  5. 1982024Family a.4.1.0: automated matches [191447] (1 protein)
    not a true family
  6. 1982025Protein automated matches [190674] (22 species)
    not a true protein

Species:

  1. 1982026African clawed frog (Xenopus laevis) [TaxId:8355] [225308] (1 PDB entry)
  2. 1982028Bacillus cereus [TaxId:1396] [231498] (1 PDB entry)
  3. 1982031Bacillus subtilis [TaxId:224308] [267907] (2 PDB entries)
    1. Domains for 3whb:
      1. 1982032Domain d3whba1: 3whb A:5-77 [265647]
        Other proteins in same PDB: d3whba2, d3whbb2
        automated match to d1vi0a1
        complexed with dcc
      2. 1982033Domain d3whbb1: 3whb B:6-77 [265649]
        Other proteins in same PDB: d3whba2, d3whbb2
        automated match to d1vi0a1
        complexed with dcc
    2. Domains for 3whc:
      1. 1982034Domain d3whca1: 3whc A:4-77 [265651]
        Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
        automated match to d1vi0a1
        complexed with st9
      2. 1982035Domain d3whcb1: 3whc B:6-77 [265653]
        Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
        automated match to d1vi0a1
        complexed with st9
      3. 1982036Domain d3whcc1: 3whc C:5-77 [265655]
        Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
        automated match to d1vi0a1
        complexed with st9
      4. 1982037Domain d3whcd1: 3whc D:6-77 [265657]
        Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
        automated match to d1vi0a1
        complexed with st9
      5. 1982038Domain d3whce1: 3whc E:4-77 [265659]
        Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
        automated match to d1vi0a1
        complexed with st9
      6. 1982039Domain d3whcf1: 3whc F:7-77 [265661]
        Other proteins in same PDB: d3whca2, d3whcb2, d3whcc2, d3whcd2, d3whce2, d3whcf2
        automated match to d1vi0a1
        complexed with st9
  4. 1982040Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [233791] (1 PDB entry)
  5. 1982042Chicken (Gallus gallus) [TaxId:9031] [256162] (1 PDB entry)
  6. 1982044Escherichia coli [TaxId:562] [226228] (11 PDB entries)
    1. Domain for 2vkv:
    2. Domain for 2xrl:
    3. Domain for 4ac0:
    4. Domain for 4b1r:
    5. Domain for 4b3a:
    6. Domain for 4d7m:
    7. Domain for 4d7n:
    8. Domains for 5fkk:
      1. 2273360Domain d5fkka1: 5fkk A:3-67 [316661]
        Other proteins in same PDB: d5fkka2, d5fkka3, d5fkkb2, d5fkkb3
        automated match to d1a6ia1
        complexed with cl, mg, pg4, pge, so4, tdc; mutant
      2. 2273362Domain d5fkkb1: 5fkk B:3-67 [316663]
        Other proteins in same PDB: d5fkka2, d5fkka3, d5fkkb2, d5fkkb3
        automated match to d1a6ia1
        complexed with cl, mg, pg4, pge, so4, tdc; mutant
    9. Domain for 5fkl:
    10. Domain for 5fkm:
    11. Domain for 5fko:
  7. 1982052Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [255149] (1 PDB entry)
  8. 1982054Fruit fly (Drosophila melanogaster) [TaxId:7227] [271176] (1 PDB entry)
  9. 1982057Golden hamster (Mesocricetus auratus) [TaxId:10036] [187780] (1 PDB entry)
  10. 1982060Human (Homo sapiens) [TaxId:9606] [189258] (25 PDB entries)
    1. Domain for 1wqi:
    2. Domain for 1yz8:
    3. Domain for 2da1:
    4. Domain for 2da2:
    5. Domain for 2da3:
    6. Domain for 2da5:
    7. Domain for 2djn:
    8. Domain for 2dmq:
    9. Domain for 2dmt:
    10. Domain for 2dmu:
    11. Domain for 2dn0:
    12. Domain for 2k40:
    13. Domain for 2l7f:
    14. Domain for 2l7m:
    15. Domain for 2l7z:
    16. Domain for 2ltp:
    17. Domain for 2m0c:
    18. Domain for 2m34:
    19. Domain for 2me0:
    20. Domain for 2me6:
    21. Domain for 2n8g:
    22. Domain for 2yum:
    23. Domain for 3a03:
    24. Domains for 4rdu:
      1. 1982062Domain d4rdua_: 4rdu A: [261144]
        automated match to d1ftta_
        protein/DNA complex
      2. 1982063Domain d4rdud_: 4rdu D: [261145]
        automated match to d1ftta_
        protein/DNA complex
    25. Domain for 5gjk:
  11. 1982086Mouse (Mus musculus) [TaxId:10090] [188321] (5 PDB entries)
    1. Domain for 2d9a:
    2. Domain for 2dms:
    3. Domain for 2ld5:
    4. Domains for 2vi6:
      1. 1982088Domain d2vi6a_: 2vi6 A: [168625]
        automated match to d1ftta_
      2. 1982089Domain d2vi6b_: 2vi6 B: [168626]
        automated match to d1ftta_
      3. 1982090Domain d2vi6c_: 2vi6 C: [168627]
        automated match to d1ftta_
      4. 1982091Domain d2vi6d_: 2vi6 D: [168628]
        automated match to d1ftta_
      5. 1982092Domain d2vi6e_: 2vi6 E: [168629]
        automated match to d1ftta_
      6. 1982093Domain d2vi6f_: 2vi6 F: [168630]
        automated match to d1ftta_
      7. 1982094Domain d2vi6g_: 2vi6 G: [168631]
        automated match to d1ftta_
      8. 1982095Domain d2vi6h_: 2vi6 H: [168632]
        automated match to d1ftta_
    5. Domain for 2xsd:
  12. 1982099Mycobacterium tuberculosis [TaxId:1773] [232223] (13 PDB entries)
    1. Domain for 3g1l:
    2. Domain for 3g1m:
    3. Domain for 3g1o:
    4. Domain for 3o8g:
    5. Domain for 3o8h:
    6. Domain for 3q0u:
    7. Domains for 3q0v:
      1. 1982102Domain d3q0va1: 3q0v A:22-92 [248737]
        Other proteins in same PDB: d3q0va2, d3q0vb2
        automated match to d3sfia1
        complexed with ll4
      2. 1982103Domain d3q0vb1: 3q0v B:22-94 [248739]
        Other proteins in same PDB: d3q0va2, d3q0vb2
        automated match to d3g1ma1
        complexed with ll4
    8. Domain for 3q0w:
    9. Domain for 3q3s:
    10. Domain for 3sdg:
    11. Domain for 3sfi:
    12. Domain for 4dw6:
    13. Domain for 5eyr:
  13. 1982113Nematode (Caenorhabditis elegans) [TaxId:6239] [260682] (1 PDB entry)
  14. 1982115Norway rat (Rattus norvegicus) [TaxId:10116] [230637] (1 PDB entry)
  15. 1982118Pasteurella multocida [TaxId:747] [225420] (1 PDB entry)
  16. 1982120Streptomyces coelicolor [311233] (1 PDB entry)
  17. 1982123Trichomonas vaginalis [TaxId:5722] [233124] (4 PDB entries)
    1. Domains for 2k9n:
      1. 1982134Domain d2k9na1: 2k9n A:1-49 [242429]
        automated match to d3osgd1
      2. 1982135Domain d2k9na2: 2k9n A:50-107 [242430]
        automated match to d3osga2
    2. Domains for 2kdz:
      1. 1982132Domain d2kdza1: 2kdz A:1-49 [242473]
        automated match to d3osgd1
        protein/DNA complex
      2. 1982133Domain d2kdza2: 2kdz A:50-107 [242474]
        automated match to d3osga2
        protein/DNA complex
    3. Domains for 3osf:
      1. 1982128Domain d3osfa1: 3osf A:48-96 [233125]
        automated match to d1h88c1
        protein/DNA complex; complexed with ipa
      2. 1982129Domain d3osfa2: 3osf A:97-150 [233126]
        automated match to d1gv2a2
        protein/DNA complex; complexed with ipa
      3. 1982130Domain d3osfd1: 3osf D:48-96 [233127]
        automated match to d1h88c1
        protein/DNA complex; complexed with ipa
      4. 1982131Domain d3osfd2: 3osf D:97-150 [233128]
        automated match to d1gv2a2
        protein/DNA complex; complexed with ipa
    4. Domains for 3osg:
      1. 1982124Domain d3osga1: 3osg A:40-96 [233129]
        automated match to d1h88c1
        protein/DNA complex
      2. 1982125Domain d3osga2: 3osg A:97-150 [233130]
        automated match to d1gv2a2
        protein/DNA complex
      3. 1982126Domain d3osgd1: 3osg D:48-96 [233131]
        automated match to d1h88c1
        protein/DNA complex
      4. 1982127Domain d3osgd2: 3osg D:97-150 [233132]
        automated match to d1gv2a2
        protein/DNA complex
  18. 2268221Proteus mirabilis [TaxId:584] [311527] (1 PDB entry)
  19. 2268318Mannheimia haemolytica [TaxId:75985] [311624] (1 PDB entry)
  20. 2270517Mycobacterium tuberculosis [TaxId:83331] [313822] (9 PDB entries)
    1. Domain for 5ezg:
    2. Domain for 5ezh:
    3. Domain for 5f04:
    4. Domain for 5f08:
    5. Domain for 5f0c:
    6. Domain for 5f0f:
    7. Domain for 5f0h:
    8. Domain for 5f1j:
    9. Domain for 5f27:
  21. 2273365Escherichia coli [TaxId:83333] [316666] (1 PDB entry)
  22. 2287027Bacillus halodurans [TaxId:272558] [330328] (2 PDB entries)
    1. Domains for 5gp9:
      1. 2287055Domain d5gp9b1: 5gp9 B:8-78 [330356]
        Other proteins in same PDB: d5gp9a2, d5gp9b2
        automated match to d1vi0a1
        complexed with gol, mg, plm
      2. 2287082Domain d5gp9a1: 5gp9 A:3-78 [330383]
        Other proteins in same PDB: d5gp9a2, d5gp9b2
        automated match to d1vi0a1
        complexed with gol, mg, plm
    2. Domains for 5gpa:
      1. 2287028Domain d5gpaa1: 5gpa A:3-78 [330329]
        Other proteins in same PDB: d5gpaa2, d5gpab2
        automated match to d1vi0a1
        complexed with gol, mg
      2. 2287032Domain d5gpab1: 5gpa B:8-78 [330333]
        Other proteins in same PDB: d5gpaa2, d5gpab2
        automated match to d1vi0a1
        complexed with gol, mg

More info for Protein automated matches from a.4.1.0: automated matches

Timeline for Protein automated matches from a.4.1.0: automated matches: