SCOPe 2.06: Domain d2qbc01: 2qbc 0:1-56

Lineage for d2qbc01 (2qbc 0:1-56)

1. Root: SCOPe 2.06

2. Class g: Small proteins [56992] (94 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.8: Zn-binding ribosomal proteins [57829] (8 families)

5. Family g.41.8.5: Ribosomal protein L32p [144200] (1 protein)
   Pfam PF01783; metal ion-binding site is lost in some members; includes the N-terminal, mainly helical tail

6. Protein Ribosomal protein L32p [144201] (3 species)

7. Species Escherichia coli [TaxId:562] [144202] (27 PDB entries)
   Uniprot P0A7N4 1-56

8. Domain d2qbc01: 2qbc 0:1-56 [150401]
   Other proteins in same PDB: d2qbc11, d2qbc31, d2qbc41, d2qbcc1, d2qbcc2, d2qbcd1, d2qbce1, d2qbcf1, d2qbcg1, d2qbcg2, d2qbch1, d2qbch2, d2qbci1, d2qbci2, d2qbcj1, d2qbck1, d2qbcl1, d2qbcm1, d2qbcn1, d2qbco1, d2qbcp1, d2qbcq1, d2qbcr1, d2qbcs1, d2qbct1, d2qbcu1, d2qbcv1, d2qbcw1, d2qbcx1, d2qbcy1, d2qbcz1
   protein/RNA complex; complexed with lll, mg, zn
   protein/RNA complex; complexed with lll, mg, zn

Details for d2qbc01

PDB Entry: 2qbc, 3.54 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 50S subunit of the second 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

PDB Compounds: (0:) 50S ribosomal protein L32

SCOPe Domain Sequences for d2qbc01:

Sequence; same for both SEQRES and ATOM records:

>d2qbc01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak

Timeline for d2qbc01:

• d2qbc01 first appeared in SCOP 1.75
  
• d2qbc01 appears in SCOPe 2.05
  
• d2qbc01 appears in SCOPe 2.07
  
• d2qbc01 appears in the current release, SCOPe 2.08