PDB entry 7o78

View 7o78 on RCSB PDB site
Description: Structure of the PL6 family chondroitinase B from Pseudopedobacter saltans, Pedsa3807
Class: lyase
Keywords: beta helix, lyase
Deposited on 2021-04-13, released 2021-07-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: XRAY
Resolution: 1.58 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polysaccharide lyase from Pseudopedobacter saltans, Pedsa3807
    Species: Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) [TaxId:762903]
    Gene: Pedsa_3807
    Database cross-references and differences (RAF-indexed):
    • Uniprot F0S763 (1-491)
      • expression tag (0)
    Domains in SCOPe 2.08: d7o78a_
  • Chain 'B':
    Compound: Polysaccharide lyase from Pseudopedobacter saltans, Pedsa3807
    Species: Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) [TaxId:762903]
    Gene: Pedsa_3807
    Database cross-references and differences (RAF-indexed):
    • Uniprot F0S763 (1-491)
      • expression tag (0)
    Domains in SCOPe 2.08: d7o78b1, d7o78b2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7o78A (A:)
gkhilvasvkevyskvdqlkagdtlllkdgiykdiqlvvkrsgskekpiviaaqnggkvf
ftgdakvelrgeylvlkdiyfkdgnrnvnqwkshgpglvaiygsynrvtgcvfnafdean
sayittslteegkvpkhcridhcvftdkitfdqvinlnnrpradkeskvlgeamyhridh
cffsnppkpgnagggirvgyyrndigrclidsnlfvrqdseaeivtsksqenvyygntil
ncqgtlnfrhgdkqvalnnffistdnkygyggmfvwgsqhiiannyfnlkktikargnaa
lylnpgpegsehalafnslivnnffddnngydinfepllerrkefakevnaefklpynit
iegnlfaskqgdkhipflgnldknnlqnnysfgqmandklftnvkpttdgsynpqsykgy
qlanvkdikniegidldiqnlinkgiegnpltwndvrpswlveipgsyakegtldqetki
rfqrvlardrnn

    Sequence, based on observed residues (ATOM records): (download) 
    >7o78A (A:)
khilvasvkevyskvdqlkagdtlllkdgiykdiqlvvkrsgskekpiviaaqnggkvff
tgdakvelrgeylvlkdiyfkdgnrnvnqwkshgpglvaiygsynrvtgcvfnafdeans
ayittslteegkvpkhcridhcvftdkitfdqvinlnnrpradkeskvlgeamyhridhc
ffsnppkpgnagggirvgyyrndigrclidsnlfvrqdseaeivtsksqenvyygntiln
cqgtlnfrhgdkqvalnnffistdnkygyggmfvwgsqhiiannyfnlkktikargnaal
ylnpgpegsehalafnslivnnffddnngydinfepllerrkefakevnaefklpyniti
egnlfaskqgdkhipflgnldknnlqnnysfgqmandklftnvkpttdgsynpqsykgyq
lanvkdikniegidldiqnlinkgiegnpltwndvrpswlveipgsyakegtldqetkir
fqrvlardrnn

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7o78B (B:)
gkhilvasvkevyskvdqlkagdtlllkdgiykdiqlvvkrsgskekpiviaaqnggkvf
ftgdakvelrgeylvlkdiyfkdgnrnvnqwkshgpglvaiygsynrvtgcvfnafdean
sayittslteegkvpkhcridhcvftdkitfdqvinlnnrpradkeskvlgeamyhridh
cffsnppkpgnagggirvgyyrndigrclidsnlfvrqdseaeivtsksqenvyygntil
ncqgtlnfrhgdkqvalnnffistdnkygyggmfvwgsqhiiannyfnlkktikargnaa
lylnpgpegsehalafnslivnnffddnngydinfepllerrkefakevnaefklpynit
iegnlfaskqgdkhipflgnldknnlqnnysfgqmandklftnvkpttdgsynpqsykgy
qlanvkdikniegidldiqnlinkgiegnpltwndvrpswlveipgsyakegtldqetki
rfqrvlardrnn