SCOPe 2.08: Structural Classification of Proteins

PDB entry 6xc9

View 6xc9 on RCSB PDB site
Description: Immune receptor complex
Class: immune system
Keywords: Immune Complex, IMMUNE SYSTEM
Deposited on 2020-06-08, released 2021-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: MHC class II HLA-DQ-alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQA1
Database cross-references and differences (RAF-indexed):
- Uniprot Q30069 (0-183)
  - engineered mutation (74)
  - expression tag (184-192)
Domains in SCOPe 2.08: d6xc9a1, d6xc9a2, d6xc9a3
Chain 'C':
Compound: Hybrid Insulin Peptide, MHC class II HLA-DQ-beta chain fusion
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQB
Database cross-references and differences (RAF-indexed):
- PDB 6XC9 (0-16)
  - linker (16)
  - linker (16)
  - linker (16)
  - linker (16)
  - linker (16)
  - linker (16)
- Uniprot A0A6B9KAL0 (16-221)
  - expression tag (222-229)
Chain 'D':
Compound: T-CELL-RECEPTOR, A3.10-alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: TRAV38-1*03
Database cross-references and differences (RAF-indexed):
- PDB 6XC9 (0-207)
Domains in SCOPe 2.08: d6xc9d1, d6xc9d2
Chain 'E':
Compound: T-CELL-RECEPTOR, A3.10-beta chain
Species: Homo sapiens [TaxId:9606]
Gene: TRBV5-1*01
Database cross-references and differences (RAF-indexed):
- PDB 6XC9 (0-244)
Domains in SCOPe 2.08: d6xc9e1, d6xc9e2
Chain 'F':
Compound: MHC class II HLA-DQ-alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQA1
Database cross-references and differences (RAF-indexed):
- Uniprot Q30069 (0-183)
  - engineered mutation (74)
  - expression tag (184-192)
Domains in SCOPe 2.08: d6xc9f1, d6xc9f2
Chain 'H':
Compound: Hybrid Insulin Peptide, MHC class II HLA-DQ-beta chain fusion
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQB
Database cross-references and differences (RAF-indexed):
- PDB 6XC9 (0-16)
  - linker (16)
  - linker (16)
  - linker (16)
  - linker (16)
  - linker (16)
  - linker (16)
- Uniprot A0A6B9KAL0 (16-221)
  - expression tag (222-229)
Chain 'I':
Compound: T-CELL-RECEPTOR, A3.10-alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: TRAV38-1*03
Database cross-references and differences (RAF-indexed):
- PDB 6XC9 (0-207)
Domains in SCOPe 2.08: d6xc9i1, d6xc9i2
Chain 'J':
Compound: T-CELL-RECEPTOR, A3.10-beta chain
Species: Homo sapiens [TaxId:9606]
Gene: TRBV5-1*01
Database cross-references and differences (RAF-indexed):
- PDB 6XC9 (0-244)
Domains in SCOPe 2.08: d6xc9j1, d6xc9j2
Heterogens: NAG, GOL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>6xc9A (A:)
edivadhvasygvnlyqsygpsgqyshefdgdeefyvdlerketvwqlplfrrfrrfdpq
faltniavlkhnlncvikrsnstaatnevpevtvfskspvtlgqpntliclvdnifppvv
nitwlsnghsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldepllkh
wepestggddddk