PDB entry 6nfe

View 6nfe on RCSB PDB site
Description: Crystal Structure of Ribose-phosphate Pyrophosphokinase from Legionella pneumophila with bound AMP, ADP, and Ribose-5-Phosphate
Class: ligase
Keywords: SSGCID, phosphorylation, AMP, ADP, Ribose-5-Phosphate, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LIGASE
Deposited on 2018-12-19, released 2019-01-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Legionella pneumophila [TaxId:446]
    Gene: prsA, prs, C3927_02005, NCTC12024_00599
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nfea1, d6nfea2
  • Chain 'B':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Legionella pneumophila [TaxId:446]
    Gene: prsA, prs, C3927_02005, NCTC12024_00599
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nfeb1, d6nfeb2
  • Heterogens: EDO, EOH, HSX, AMP, ADP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6nfeA (A:)
mahhhhhhmstmmiftgnanpelalkisshlqipigkatvgtfsdgetmveilenvrgkd
vfvlqstcapannnlmellimadalrrssagritavvpyfgyarqdrrvrsarvpitakv
vadmmasvgicrvltvdlhadqiqgffympvdnvystpvlleditkqklnnimivspdvg
gvvraravakrlndaelsiidkrrsgpnksevmhiigepanknciivddivdtagtlcta
ahelkkngaksvrayithpvlsgpavnnikhsgldevvvtdtiplsaeaqncekirvvsl
admlaqaikrvnveesvssmfae

    Sequence, based on observed residues (ATOM records): (download) 
    >6nfeA (A:)
stmmiftgnanpelalkisshlqipigkatvgtfsdgetmveilenvrgkdvfvlqstca
pannnlmellimadalrrssagritavvpyfgyarqdrrvrsarvpitakvvadmmasvg
icrvltvdlhadqiqgffympvdnvystpvlleditkqklnnimivspdvggvvrarava
krlndaelsiidkrrevmhiigepanknciivddivdtagtlctaahelkkngaksvray
ithpvlsgpavnnikhsgldevvvtdtiplsaeaqncekirvvsladmlaqaikrvnv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6nfeB (B:)
mahhhhhhmstmmiftgnanpelalkisshlqipigkatvgtfsdgetmveilenvrgkd
vfvlqstcapannnlmellimadalrrssagritavvpyfgyarqdrrvrsarvpitakv
vadmmasvgicrvltvdlhadqiqgffympvdnvystpvlleditkqklnnimivspdvg
gvvraravakrlndaelsiidkrrsgpnksevmhiigepanknciivddivdtagtlcta
ahelkkngaksvrayithpvlsgpavnnikhsgldevvvtdtiplsaeaqncekirvvsl
admlaqaikrvnveesvssmfae

    Sequence, based on observed residues (ATOM records): (download) 
    >6nfeB (B:)
stmmiftgnanpelalkisshlqipigkatvgtfsdgetmveilenvrgkdvfvlqstca
pannnlmellimadalrrssagritavvpyfgyarqdrrvrsarvpitakvvadmmasvg
icrvltvdlhadqiqgffympvdnvystpvlleditkqklnnimivspdvggvvrarava
krlndaelsiidkrrsevmhiigepanknciivddivdtagtlctaahelkkngaksvra
yithpvlsgpavnnikhsgldevvvtdtiplsaeaqncekirvvsladmlaqaikrvnv