PDB entry 6f2l
View 6f2l on RCSB PDB site
Description: Crystal structure of the complex between PPARgamma LBD and the ligand LJ570: structure obtained from crystals of the apo-form soaked for 15 days.
Class: transcription
Keywords: nuclear receptor, transcription factor, complex with an agonist, TRANSCRIPTION
Deposited on
2017-11-24, released
2018-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-01-10, with a file datestamp of
2018-01-05.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Peroxisome proliferator-activated receptor gamma
Species: Homo sapiens [TaxId:9606]
Gene: PPARG, NR1C3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6f2la_ - Chain 'B':
Compound: Peroxisome proliferator-activated receptor gamma
Species: Homo sapiens [TaxId:9606]
Gene: PPARG, NR1C3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6f2lb_ - Heterogens: AXY, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6f2lA (A:)
mgsshhhhhhssglvprgshmaeissdidqlnpesadlralakhlydsyiksfpltkaka
railtgkttdkspfviydmnslmmgedkikfkhitplqeqskevairifqgcqfrsveav
qeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtrefl
kslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnl
lqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiy
kdly
Sequence, based on observed residues (ATOM records): (download)
>6f2lA (A:)
esadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgedkikfkk
evairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmn
kdgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsg
drpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqv
ikktetdmslhpllqeiyk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6f2lB (B:)
mgsshhhhhhssglvprgshmaeissdidqlnpesadlralakhlydsyiksfpltkaka
railtgkttdkspfviydmnslmmgedkikfkhitplqeqskevairifqgcqfrsveav
qeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtrefl
kslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnl
lqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiy
kdly
Sequence, based on observed residues (ATOM records): (download)
>6f2lB (B:)
esadlralakhlydsyiksfpltkakarailtkttdkspfviydmnslmmgedkikfkhi
tkevairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlasl
mnkdgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviil
sgdrpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqll
qvikktehpllqeiy