PDB entry 5t64

View 5t64 on RCSB PDB site
Description: X-ray structure of the C3-methyltransferase KijD1 from Actinomadura kijaniata in complex with TDP and SAH
Class: transferase
Keywords: C3-methyltransferase, antitumor, antibiotic, kijanimicin, TRANSFERASE
Deposited on 2016-09-01, released 2016-09-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-09-14, with a file datestamp of 2016-09-09.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sugar 3-C-methyl transferase
    Species: Actinomadura kijaniata [TaxId:46161]
    Gene: KijD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5t64a_
  • Chain 'B':
    Compound: Sugar 3-C-methyl transferase
    Species: Actinomadura kijaniata [TaxId:46161]
    Gene: KijD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5t64b_
  • Heterogens: ZN, SAH, MG, TMP, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5t64A (A:)
ghmtgptdataparcrvcgdtvdefldlgrqplsdrfltpadtdgeffyrlavgrchacg
mvqlteevprhlmfheeypyhssgssvmrehfakvaqrllateltgadpfvveigcndgi
mlravheagvrhlgfepsagvaevarsrgvrvrteffekatatavresegpadviyaant
mchipylesvfqgadallgpdgvvvfedpylgdivaktsfdqiydehfylfsagsvaama
erfgfelvdverlpvhggevrytlarrgartpteavgrllaeereqglddlatlrtfaan
vhtvrdelvalltrlraeghrvvgygataksatvtnfcgigpdlvsfvcdttpgkqhrlt
pgkhlpvrpaeafadpypdyallfawnhadeimakeqefrqaggrwilyvpevrvl

    Sequence, based on observed residues (ATOM records): (download) 
    >5t64A (A:)
aparcrvcgdtvdefldlgrqplsdrfltpadtdgeffyrlavgrchacgmvqlteevpr
hlmfheeypyhssgssvmrehfakvaqrllateltgadpfvveigcndgimlravheagv
rhlgfepsagvaevarsrgvrvrteffekatatavresegpadviyaantmchipylesv
fqgadallgpdgvvvfedpylgdivaktsfdqiydehfylfsagsvaamaerfgfelvdv
erlpvhggevrytlarrgartpteavgrllaeereqglddlatlrtfaanvhtvrdelva
lltrlraeghrvvgygataksatvtnfcgigpdlvsfvcdttpgkqhrltpgkhlpvrpa
eafadpypdyallfawnhadeimakeqefrqaggrwilyvpevrvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5t64B (B:)
ghmtgptdataparcrvcgdtvdefldlgrqplsdrfltpadtdgeffyrlavgrchacg
mvqlteevprhlmfheeypyhssgssvmrehfakvaqrllateltgadpfvveigcndgi
mlravheagvrhlgfepsagvaevarsrgvrvrteffekatatavresegpadviyaant
mchipylesvfqgadallgpdgvvvfedpylgdivaktsfdqiydehfylfsagsvaama
erfgfelvdverlpvhggevrytlarrgartpteavgrllaeereqglddlatlrtfaan
vhtvrdelvalltrlraeghrvvgygataksatvtnfcgigpdlvsfvcdttpgkqhrlt
pgkhlpvrpaeafadpypdyallfawnhadeimakeqefrqaggrwilyvpevrvl

    Sequence, based on observed residues (ATOM records): (download) 
    >5t64B (B:)
arcrvcgdtvdefldlgrqplsdrfltpadtdgeffyrlavgrchacgmvqlteevprhl
mhssgssvmrehfakvaqrllateltgadpfvveigcndgimlravheagvrhlgfepsa
gvaevarsrgvrvrteffekatatavresegpadviyaantmchipylesvfqgadallg
pdgvvvfedpylgdivaktsfdqiydehfylfsagsvaamaerfgfelvdverlpvhgge
vrytlarrgartpteavgrllaeereqglddlatlrtfaanvhtvrdelvalltrlraeg
hrvvgygataksatvtnfcgigpdlvsfvcdttpgkqhrltpgkhlpvrpaeafadpypd
yallfawnhadeimakeqefrqaggrwilyvpevrvl