PDB entry 5or7

View 5or7 on RCSB PDB site
Description: Atomic structure of the murine norovirus protruding domain and sCD300lf receptor complex
Class: viral protein
Keywords: CR10, sCD300lf, complex, VIRAL PROTEIN
Deposited on 2017-08-15, released 2018-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-05-23, with a file datestamp of 2018-05-18.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Murine norovirus GV/CR10/2005/USA [TaxId:463724]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5or7a_
  • Chain 'B':
    Compound: capsid protein
    Species: Murine norovirus GV/CR10/2005/USA [TaxId:463724]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5or7b_
  • Chain 'C':
    Compound: CMRF35-like molecule 1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd300lf, Clm1, Lmir3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5or7c_
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5or7A (A:)
mrmsdgaapkangseasgqdlvptaveqavpiqpvagsalaapaagqinqidpwifqnfv
qcplgefsisprntpgeilfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftag
kvvvalvppyfpkgslttaqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmr
lvcmlytplrtnspgdesfvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlc
tharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsg
tgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktgdklkvttfemilg
pttnvdqapyqgrvyasltavasldlvdgrvravprsiygfqdvipeyndgllvplappi
gpflpgevllrfrtymrqldtadaaaeaidcalpqefiswfasnaftvqsdalllryrnt
ltgqllfecklysegyialsysgsgpltfptdgffevvswvprlfqlasvgslttgrtlk
q

    Sequence, based on observed residues (ATOM records): (download) 
    >5or7A (A:)
rmvdlpvlqprlctharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvs
cfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettkkl
kvttfemilgpttnvdqapyqgrvyasltavasldlvdgrvravprsiygfqdvipeynd
gllvplappigpflpgevllrfrtymrqldaaaeaidcalpqefiswfasnaftvqsdal
llryrntltgqllfecklysegyialsysgsgpltfptdgffevvswvprlfqlasv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5or7B (B:)
mrmsdgaapkangseasgqdlvptaveqavpiqpvagsalaapaagqinqidpwifqnfv
qcplgefsisprntpgeilfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftag
kvvvalvppyfpkgslttaqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmr
lvcmlytplrtnspgdesfvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlc
tharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsg
tgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktgdklkvttfemilg
pttnvdqapyqgrvyasltavasldlvdgrvravprsiygfqdvipeyndgllvplappi
gpflpgevllrfrtymrqldtadaaaeaidcalpqefiswfasnaftvqsdalllryrnt
ltgqllfecklysegyialsysgsgpltfptdgffevvswvprlfqlasvgslttgrtlk
q

    Sequence, based on observed residues (ATOM records): (download) 
    >5or7B (B:)
rmvdlpvlqprlctharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvs
cfaaeaayefqstgevatftlieqdgsayvpgdraaplgypdfsgqleievqtetklkvt
tfemilgptdqapyqgrvyasltaasldlvdgrvravprsiygfqdvipeyndgllvpla
ppigpflpgevllrfrtymrqldtadaaaeaidcalpqefiswfasnaftvqsdalllry
rntltgqllfecklysegyialsysgsgpltfptdgffevvswvprlfqlasv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5or7C (C:)
mhlsllvpflfwitgcctaedpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpq
rscktlvetdaseqlvkknrvsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmf
kvtvnigpvptmppitstttiftvtttvketsmfptltsyysdnghgggdsgggedgvgd
gfldlsvllpvisavllllllvaslfawrmvrrqkkaagppseqaqslegdlcyadlslk
qprtspgsswkkgssmsssgkdhqeeveyvtmapfpreevsyaaltlaglgqeptygntg
cpithvprtgleeetteyssirrplpaamp

    Sequence, based on observed residues (ATOM records): (download) 
    >5or7C (C:)
edpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkkn
rvsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvp