PDB entry 5gvs

View 5gvs on RCSB PDB site
Description: Crystal structure of the DDX41 DEAD domain in an apo open form
Class: hydrolase
Keywords: ATPase, DEAD box protein, HYDROLASE
Deposited on 2016-09-06, released 2016-10-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable ATP-dependent RNA helicase DDX41
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX41, ABS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5gvsa_
  • Chain 'B':
    Compound: Probable ATP-dependent RNA helicase DDX41
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX41, ABS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5gvsb_
  • Chain 'C':
    Compound: Probable ATP-dependent RNA helicase DDX41
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX41, ABS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5gvsc_
  • Chain 'D':
    Compound: Probable ATP-dependent RNA helicase DDX41
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX41, ABS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5gvsd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5gvsA (A:)
ilvegdgipppiksfkemkfpaailrglkkkgihhptpiqiqgiptilsgrdmigiaftg
sgktlvftlpvimfcleqekrlpfskregpygliicpsrelarqthgileyycrllqeds
spllrcalciggmsvkeqmetirhgvhmmvatpgrlmdllqkkmvsldicrylaldeadr
midmgfegdirtifsyfkgqrqtllfsatmpkkiqnfaksalvkpvtinvg

    Sequence, based on observed residues (ATOM records): (download) 
    >5gvsA (A:)
kemkfpaailrglkkkgihhptpiqiqgiptilsgrdmigiaftgsgktlvftlpvimfc
leqekrlpfskregpygliicpsrelarqthgileyycrllqedsspllrcalciggmsv
keqmetirhgvhmmvatpgrlmdllqkkmvsldicrylaldeadrmidmgfegdirtifs
yfkgqrqtllfsatmpkkiqnfaksalvkpvtinvg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5gvsB (B:)
ilvegdgipppiksfkemkfpaailrglkkkgihhptpiqiqgiptilsgrdmigiaftg
sgktlvftlpvimfcleqekrlpfskregpygliicpsrelarqthgileyycrllqeds
spllrcalciggmsvkeqmetirhgvhmmvatpgrlmdllqkkmvsldicrylaldeadr
midmgfegdirtifsyfkgqrqtllfsatmpkkiqnfaksalvkpvtinvg

    Sequence, based on observed residues (ATOM records): (download) 
    >5gvsB (B:)
emkfpaailrglkkkgihhptpiqiqgiptilsgrdmigiaftgsgktlvftlpvimfcl
eqekrlpfskregpygliicpsrelarqthgileyycrllqedsspllrcalciggmsvk
eqmetirhgvhmmvatpgrlmdllqkkmvsldicrylaldeadrmidmgfegdirtifsy
fkgqrqtllfsatmpkkiqnfaksalvkpvtinvg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5gvsC (C:)
ilvegdgipppiksfkemkfpaailrglkkkgihhptpiqiqgiptilsgrdmigiaftg
sgktlvftlpvimfcleqekrlpfskregpygliicpsrelarqthgileyycrllqeds
spllrcalciggmsvkeqmetirhgvhmmvatpgrlmdllqkkmvsldicrylaldeadr
midmgfegdirtifsyfkgqrqtllfsatmpkkiqnfaksalvkpvtinvg

    Sequence, based on observed residues (ATOM records): (download) 
    >5gvsC (C:)
ailrglkkkgiptilsgrdmigiaftgsgktlvftlpvimfcleqekrlpfskregpygl
iicpsrelarqthgileyycrllqedsspllrcalciggmsvkeqmetirhgvhmmvatp
grlmdllqkkmvsldicrylaldeadrmidmgfegdirtifsyfkgqrqtllfsatmpkk
iqnfaksalvkpvtinvg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5gvsD (D:)
ilvegdgipppiksfkemkfpaailrglkkkgihhptpiqiqgiptilsgrdmigiaftg
sgktlvftlpvimfcleqekrlpfskregpygliicpsrelarqthgileyycrllqeds
spllrcalciggmsvkeqmetirhgvhmmvatpgrlmdllqkkmvsldicrylaldeadr
midmgfegdirtifsyfkgqrqtllfsatmpkkiqnfaksalvkpvtinvg

    Sequence, based on observed residues (ATOM records): (download) 
    >5gvsD (D:)
ailrglkkkiptilsgrdmigiaftgsgktlvftlpvimfcleqekrlpfskregpygli
icpsrelarqthgileyycrllqedsspllrcalciggmsvkeqmetirhgvhmmvatpg
rlmdllqkkmvsldicrylaldeadrmidmgfegdirtifsyfkgqrqtllfsatmpkki
qnfaksalvkpvtinvg