PDB entry 5b1x

View 5b1x on RCSB PDB site
Description: Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in complex with biantennary glycan
Class: carbohydrate binding protein
Keywords: C-type lectin, innate immunity, carbohydrate recognition, CARBOHYDRATE BINDING PROTEIN
Deposited on 2015-12-21, released 2016-05-11
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-05-11, with a file datestamp of 2016-05-06.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-type lectin domain family 4 member A
    Species: Homo sapiens [TaxId:9606]
    Gene: CLEC4A, CLECSF6, DCIR, LLIR, HDCGC13P
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UMR7 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.07: d5b1xa1, d5b1xa2
  • Chain 'B':
    Compound: C-type lectin domain family 4 member A
    Species: Homo sapiens [TaxId:9606]
    Gene: CLEC4A, CLECSF6, DCIR, LLIR, HDCGC13P
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UMR7 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.07: d5b1xb1, d5b1xb2
  • Chain 'C':
    Compound: C-type lectin domain family 4 member A
    Species: Homo sapiens [TaxId:9606]
    Gene: CLEC4A, CLECSF6, DCIR, LLIR, HDCGC13P
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UMR7 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.07: d5b1xc1, d5b1xc2
  • Chain 'D':
    Compound: C-type lectin domain family 4 member A
    Species: Homo sapiens [TaxId:9606]
    Gene: CLEC4A, CLECSF6, DCIR, LLIR, HDCGC13P
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UMR7 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.07: d5b1xd1, d5b1xd2
  • Heterogens: MAN, NAG, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5b1xA (A:)
gscpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesay
fvglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvncl
gpqrsvcemmkihl

    Sequence, based on observed residues (ATOM records): (download) 
    >5b1xA (A:)
scpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesayf
vglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvnclg
pqrsvcemmk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5b1xB (B:)
gscpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesay
fvglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvncl
gpqrsvcemmkihl

    Sequence, based on observed residues (ATOM records): (download) 
    >5b1xB (B:)
scpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesayf
vglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvnclg
pqrsvcemmk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5b1xC (C:)
gscpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesay
fvglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvncl
gpqrsvcemmkihl

    Sequence, based on observed residues (ATOM records): (download) 
    >5b1xC (C:)
scpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesayf
vglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvnclg
pqrsvcemm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5b1xD (D:)
gscpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesay
fvglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvncl
gpqrsvcemmkihl

    Sequence, based on observed residues (ATOM records): (download) 
    >5b1xD (D:)
scpknwksfssncyfistesaswqdsekdcarmeahllvintqeeqdfifqnlqeesayf
vglsdpegqrhwqwvdqtpynesstfwhprepsdpnercvvlnfrkspkrwgwndvnclg
pqrsvcemm