PDB entry 4zdw

View 4zdw on RCSB PDB site
Description: Crystal structure of the Rab GTPase Sec4p mutant - S29V in complex with Sec2p and GDP
Class: GTP binding protein
Keywords: GTPase, GDP bound, Rab Sec4p, Sec2p, GTP binding protein
Deposited on 2015-04-20, released 2015-10-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-10-14, with a file datestamp of 2015-10-09.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ras-related protein SEC4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC4, SRO6, YFL005W
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07560 (1-169)
      • engineered mutation (11)
    Domains in SCOPe 2.06: d4zdwa_
  • Chain 'B':
    Compound: Rab guanine nucleotide exchange factor SEC2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC2, YNL272C, N0641
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17065 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.06: d4zdwb1, d4zdwb2
  • Chain 'C':
    Compound: Rab guanine nucleotide exchange factor SEC2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC2, YNL272C, N0641
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17065 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.06: d4zdwc1, d4zdwc2
  • Heterogens: GDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4zdwA (A:)
ssimkilligdvgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqlwdta
gqerfrtittayyrgamgiilvydvtdertftnikqwfktvnehandeaqlllvgnksdm
etrvvtadqgealakelgipfiessaknddnvneifftlakliqekidsn

    Sequence, based on observed residues (ATOM records): (download) 
    >4zdwA (A:)
simkilligdvgvgkscllvrfvedkfnpsfittigidfkiktvdinvklqlwdtagqer
frtittayyrgamgiilvydvtdertftnikqwfktvnehandeaqlllvgnksdmetrv
vtadqgealakelgipfiessaknddnvneifftlakliqekidsn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4zdwB (B:)
snynqlkedyntlkrelsdrddevkrlrediakenelrtkaeeeadklnkevedltaslf
deannmvadarkekyaieilnkrlteqlrekdt

    Sequence, based on observed residues (ATOM records): (download) 
    >4zdwB (B:)
snynqlkedyntlkrelsdrddevkrlrediakenelrtkaeeeadklnkevedltaslf
deannmvadarkekyaieilnkrlteqlrek

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4zdwC (C:)
snynqlkedyntlkrelsdrddevkrlrediakenelrtkaeeeadklnkevedltaslf
deannmvadarkekyaieilnkrlteqlrekdt

    Sequence, based on observed residues (ATOM records): (download) 
    >4zdwC (C:)
snynqlkedyntlkrelsdrddevkrlrediakenelrtkaeeeadklnkevedltaslf
deannmvadarkekyaieilnkrlteqlrek