PDB entry 4yg6

View 4yg6 on RCSB PDB site
Description: Structural basis of glycan recognition in neonate-specific rotaviruses
Class: viral protein
Keywords: rotavirus, structural biology, glycan, VIRAL PROTEIN
Deposited on 2015-02-25, released 2015-09-30
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-09-30, with a file datestamp of 2015-09-25.
Experiment type: XRAY
Resolution: 1.46 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer capsid protein VP8*
    Species: Rotavirus A [TaxId:10930]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35746 (2-162)
      • expression tag (1)
    Domains in SCOPe 2.05: d4yg6a_
  • Chain 'B':
    Compound: Outer capsid protein VP8*
    Species: Rotavirus A [TaxId:10930]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35746 (2-162)
      • expression tag (0-1)
    Domains in SCOPe 2.05: d4yg6b_
  • Chain 'C':
    Compound: Outer capsid protein VP8*
    Species: Rotavirus A [TaxId:10930]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35746 (2-162)
      • expression tag (0-1)
    Domains in SCOPe 2.05: d4yg6c_
  • Chain 'D':
    Compound: Outer capsid protein VP8*
    Species: Rotavirus A [TaxId:10930]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35746 (2-162)
      • expression tag (0-1)
    Domains in SCOPe 2.05: d4yg6d_
  • Heterogens: GAL, NAG, BGC, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4yg6A (A:)
gsldgpyapdssnlpsncwylvnpsndgvvfsvtdnstfwmftylvlpntaqtnvtvnvm
netvnisidnsgstyrfvdyiktsstqaygsrnylntahrlqayrrdgdgnisnywgadt
qgdlrvgtysnpvpnavinlnadfyvipdsqqetcteyirggl

    Sequence, based on observed residues (ATOM records): (download) 
    >4yg6A (A:)
sldgpyapdssnlpsncwylvnpsndgvvfsvtdnstfwmftylvlpntaqtnvtvnvmn
etvnisidnsgstyrfvdyiktsstqaygsrnylntahrlqayrrdgdgnisnywgadtq
gdlrvgtysnpvpnavinlnadfyvipdsqqetcteyirggl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4yg6B (B:)
gsldgpyapdssnlpsncwylvnpsndgvvfsvtdnstfwmftylvlpntaqtnvtvnvm
netvnisidnsgstyrfvdyiktsstqaygsrnylntahrlqayrrdgdgnisnywgadt
qgdlrvgtysnpvpnavinlnadfyvipdsqqetcteyirggl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4yg6C (C:)
gsldgpyapdssnlpsncwylvnpsndgvvfsvtdnstfwmftylvlpntaqtnvtvnvm
netvnisidnsgstyrfvdyiktsstqaygsrnylntahrlqayrrdgdgnisnywgadt
qgdlrvgtysnpvpnavinlnadfyvipdsqqetcteyirggl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4yg6D (D:)
gsldgpyapdssnlpsncwylvnpsndgvvfsvtdnstfwmftylvlpntaqtnvtvnvm
netvnisidnsgstyrfvdyiktsstqaygsrnylntahrlqayrrdgdgnisnywgadt
qgdlrvgtysnpvpnavinlnadfyvipdsqqetcteyirggl