PDB entry 4yef

View 4yef on RCSB PDB site
Description: beta1 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclododextrin
Class: sugar binding protein
Keywords: carbohydrate binding module, CBM, AMPK, AMP-activated protein kinase, cyclodextrin, SUGAR BINDING PROTEIN
Deposited on 2015-02-24, released 2015-06-24
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-06-24, with a file datestamp of 2015-06-19.
Experiment type: XRAY
Resolution: 1.72 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4yefa_
  • Chain 'B':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80386 (8-88)
      • expression tag (3-7)
    Domains in SCOPe 2.05: d4yefb_
  • Chain 'C':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4yefc_
  • Chain 'D':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4yefd_
  • Chain 'E':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80386 (8-88)
      • expression tag (4-7)
    Domains in SCOPe 2.05: d4yefe_
  • Chain 'F':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4yeff_
  • Chain 'G':
    Compound: 5'-AMP-activated protein kinase subunit beta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Prkab1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4yefg_
  • Heterogens: 4CQ, GOL, SO4, GLU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4yefA (A:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefA (A:)
arptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykffvdgqwthd
psepivtsqlgtvnniiqvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4yefB (B:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefB (B:)
gspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykffvd
gqwthdpsepivtsqlgtvnniiqvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4yefC (C:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefC (C:)
rptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykffvdgqwthdp
sepivtsqlgtvnniiqvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4yefD (D:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefD (D:)
ptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykffvdgqwthdps
epivtsqlgtvnniiqv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4yefE (E:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefE (E:)
spnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykffvdg
qwthdpsepivtsqlgtvnniiqvk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4yefF (F:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefF (F:)
ptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykffvdgqwthdps
epivtsqlgtvnniiqv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4yefG (G:)
gplgspnsqarptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpegehqykf
fvdgqwthdpsepivtsqlgtvnniiqvk

    Sequence, based on observed residues (ATOM records): (download) 
    >4yefG (G:)
ptvfrwtgggkevylsgsfnnwsklpltrsqnnfvaildlpeghqykffvdgqwthdpse
pivtsqlgtvnnii