PDB entry 4ybo

View 4ybo on RCSB PDB site
Description: Structure of Citrate Synthase from the Thermoacidophilic Euryarchaeon Thermolasma acidophilum
Class: transferase
Keywords: Tricarboxylic acid cycle, Transferase, Carbohydrate metabolism
Deposited on 2015-02-19, released 2015-09-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-10-14, with a file datestamp of 2015-10-09.
Experiment type: XRAY
Resolution: 2.18 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: citrate synthase
    Species: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) [TaxId:273075]
    Gene: gltA, Ta0169
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21553 (Start-383)
      • expression tag (384-398)
    Domains in SCOPe 2.07: d4yboa1, d4yboa2
  • Chain 'B':
    Compound: citrate synthase
    Species: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) [TaxId:273075]
    Gene: gltA, Ta0169
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ybob_
  • Chain 'C':
    Compound: citrate synthase
    Species: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) [TaxId:273075]
    Gene: gltA, Ta0169
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4yboc_
  • Chain 'D':
    Compound: citrate synthase
    Species: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) [TaxId:273075]
    Gene: gltA, Ta0169
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21553 (Start-383)
      • expression tag (384-398)
    Domains in SCOPe 2.07: d4ybod1, d4ybod2
  • Heterogens: BCT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4yboA (A:)
peteeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlp
teqelrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtd
rdvaaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamnta
lilytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpa
mvekwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkle
dfgikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqq
rlirpravyvgpaerkyvpiaerkvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4yboA (A:)
eiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlpteqe
lrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtdrdva
aemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamntalily
tdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpamvek
wfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkledfgi
kafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqqrlir
pravyvgpaerkyvpiaerkvdklaaalehhhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4yboB (B:)
peteeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlp
teqelrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtd
rdvaaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamnta
lilytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpa
mvekwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkle
dfgikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqq
rlirpravyvgpaerkyvpiaerkvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4yboB (B:)
eeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlpteq
elrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtdrdv
aaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamntalil
ytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpamve
kwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkledfg
ikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqqrli
rpravyvgpaerkyvpiaerk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4yboC (C:)
peteeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlp
teqelrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtd
rdvaaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamnta
lilytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpa
mvekwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkle
dfgikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqq
rlirpravyvgpaerkyvpiaerkvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4yboC (C:)
eeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlpteq
elrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtdrdv
aaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamntalil
ytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpamve
kwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkledfg
ikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqqrli
rpravyvgpaerkyvpiaer

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4yboD (D:)
peteeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlp
teqelrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtd
rdvaaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamnta
lilytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpa
mvekwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkle
dfgikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqq
rlirpravyvgpaerkyvpiaerkvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4yboD (D:)
teeiskgledvnikwtrlttidgnkgilryggysvediiasgaqdeeiqylflygnlpte
qelrkyketvqkgykipdfvinairqlpresdavamqmaavaamaasetkfkwnkdtdrd
vaaemigrmsaitvnvyrhimnmpaelpkpsdsyaesflnaafgrkatkeeidamntali
lytdhevpasttaglvavstlsdmysgitaalaalkgplhggaaeaaiaqfdeikdpamv
ekwfndniingkkrlmgfghrvyktydprakifkgiaeklsskkpevhkvyeiatkledf
gikafgskgiypntdyfsgivymsigfplrnniytalfalsrvtgwqahfieyveeqqrl
irpravyvgpaerkyvpiaerkvdklaaalehhhhhh