PDB entry 4okc

View 4okc on RCSB PDB site
Description: Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis
Class: sugar binding protein
Keywords: Beta-prism II fold, bacterial lectin, protein-carbohydrate interactions, Beta-Prism II, Carbohydrate binding, Carbohydrate/Sugar Binding, SUGAR BINDING PROTEIN
Deposited on 2014-01-22, released 2014-07-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-07-23, with a file datestamp of 2014-07-18.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.225
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LysM domain protein
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Gene: MSMEG_3662
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QYH7 (0-104)
      • expression tag (105-106)
    Domains in SCOPe 2.08: d4okca1, d4okca2
  • Chain 'B':
    Compound: LysM domain protein
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Gene: MSMEG_3662
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QYH7 (0-104)
      • expression tag (105)
    Domains in SCOPe 2.08: d4okcb1, d4okcb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4okcA (A:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4okcA (A:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawsle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4okcB (B:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4okcB (B:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawsl