PDB entry 4ios
View 4ios on RCSB PDB site
Description: Structure of phage TP901-1 RBP (ORF49) in complex with nanobody 11.
Class: viral protein
Keywords: all beta, jelly roll motif, receptor binding protein, neutralizing llama antibody domain, CELL ADHESION-IMMUNE SYSTEM complex, VIRAL PROTEIN
Deposited on
2013-01-08, released
2013-03-20
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-15, with a file datestamp of
2017-11-10.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: bpp
Species: Lactococcus phage TP901-1 [TaxId:35345]
Gene: bpp, ORF49
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosa_ - Chain 'B':
Compound: bpp
Species: Lactococcus phage TP901-1 [TaxId:35345]
Gene: bpp, ORF49
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosb_ - Chain 'C':
Compound: bpp
Species: Lactococcus phage TP901-1 [TaxId:35345]
Gene: bpp, ORF49
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosc_ - Chain 'D':
Compound: Llama nanobody 11
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosd_ - Chain 'E':
Compound: Llama nanobody 11
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iose_ - Chain 'F':
Compound: Llama nanobody 11
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosf_ - Chain 'G':
Compound: Llama nanobody 11
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosg_ - Chain 'H':
Compound: bpp
Species: Lactococcus phage TP901-1 [TaxId:35345]
Gene: bpp, ORF49
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4iosh_ - Heterogens: GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4iosA (A:)
tkswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcslvg
hmvggwnafhidipssgvcqwfgptassgtprgtgtypid
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4iosB (B:)
tkswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcslvg
hmvggwnafhidipssgvcqwfgptassgtprgtgtypid
Sequence, based on observed residues (ATOM records): (download)
>4iosB (B:)
kswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcslvgh
mvggwnafhidipssgvcqwfgptassgtprgtgtypid
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4iosC (C:)
tkswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcslvg
hmvggwnafhidipssgvcqwfgptassgtprgtgtypid
Sequence, based on observed residues (ATOM records): (download)
>4iosC (C:)
kswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcslvgh
mvggwnafhidipssgvcqwfgptassgtprgtgtypid
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4iosD (D:)
qvqlvesggglvqagdslrlscavsgrtfssnvigwfrqapgkerefvaaiswstgstyy
grsmkgrcaasrdnakntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvt
vss
Sequence, based on observed residues (ATOM records): (download)
>4iosD (D:)
vqlvesggglvqagdslrlscavssnvigwfrqapgkerefvaaiswstgstyygrsmkg
rcaasrdntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvtvs
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4iosE (E:)
qvqlvesggglvqagdslrlscavsgrtfssnvigwfrqapgkerefvaaiswstgstyy
grsmkgrcaasrdnakntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvt
vss
Sequence, based on observed residues (ATOM records): (download)
>4iosE (E:)
vqlvesggglvqagdslrlscavsgrsnvigwfrqapgkerefvaaiswstgstyygrsm
kgrcaasrdnakntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvtvs
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4iosF (F:)
qvqlvesggglvqagdslrlscavsgrtfssnvigwfrqapgkerefvaaiswstgstyy
grsmkgrcaasrdnakntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvt
vss
Sequence, based on observed residues (ATOM records): (download)
>4iosF (F:)
vqlvesggglvqagdslrlscavsgsnvigwfrqapgkerefvaaiswstgstyygrsmk
grcaasrdkntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvtvs
- Chain 'G':
Sequence, based on SEQRES records: (download)
>4iosG (G:)
qvqlvesggglvqagdslrlscavsgrtfssnvigwfrqapgkerefvaaiswstgstyy
grsmkgrcaasrdnakntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvt
vss
Sequence, based on observed residues (ATOM records): (download)
>4iosG (G:)
vqlvesggglvqagdslrlscavsgrsnvigwfrqapgkerefvaaiswstgstyygrsm
kgrcaasrdnakntvalqlnslkpedtavyycaatldwgktlsdeydywgqgtqvtv
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>4iosH (H:)
tkswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcslvg
hmvggwnafhidipssgvcqwfgptassgtprgtgtypid