PDB entry 3zed

View 3zed on RCSB PDB site
Description: X-ray structure of the birnavirus VP1-VP3 complex
Class: viral protein
Keywords: viral protein, virus morphogenesis
Deposited on 2012-12-04, released 2013-01-16
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-03-06, with a file datestamp of 2013-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.181
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3zeda_
  • Chain 'B':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3zedb_
  • Chain 'C':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3zedc_
  • Chain 'D':
    Compound: capsid protein vp3
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: capsid protein vp3
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: capsid protein vp3
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3zedA (A:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealetiqsdkiiagksnpeknpgtaanpvvgygefsekipltptqkknakrrek
qrrnqvehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3zedA (A:)
edvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlrqmved
gklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfptgpet
lrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlaklleqtlp
intpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdttaealvl
adsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrniwsapy
pthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldndedlvmiy
adniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwatfamn
vapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmtkefmd
leektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldllgwsai
ysrqmemfvpvlenerliasaaypkglenkalarkpaeiayqivryeairlvggwnnpll
etaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlvdintpl
dsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlrdqalal
kpasssvdnwaeateelaqqqqllmkannllkssltetrealeti

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3zedB (B:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealetiqsdkiiagksnpeknpgtaanpvvgygefsekipltptqkknakrrek
qrrnqvehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3zedB (B:)
edvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlrqmved
gklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfptgpet
lrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlaklleqtlp
intpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdttaealvl
adsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrniwsapy
pthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldndedlvmiy
adniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwatfamn
vapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmtkefmd
leektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldllgwsai
ysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvggwnnpl
letaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlvdintp
ldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlrdqala
lkpasssvdnwaeateelaqqqqllmkannllkssltetrealeti

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3zedC (C:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealetiqsdkiiagksnpeknpgtaanpvvgygefsekipltptqkknakrrek
qrrnqvehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3zedC (C:)
edvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlrqmved
gklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfptgpet
lrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlaklleqtlp
intpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdttaealvl
adsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrniwsapy
pthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldndedlvmiy
adniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwatfamn
vapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmtkefmd
leektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldllgwsai
ysrqmemfvpvlenerliasaaypkglenkalarkpaeiayqivryeairlvggwnnpll
etaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlvdintpl
dsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlrdqalal
kpasssvdnwaeateelaqqqqllmkannllkssltetrealeti

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.