SCOPe 2.06: Domain d3zeda_: 3zed A:

Lineage for d3zeda_ (3zed A:)

1. Root: SCOPe 2.06

2. Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.0: automated matches [227142] (1 protein)
   not a true family

6. Protein automated matches [226844] (7 species)
   not a true protein

7. Species Infectious pancreatic necrosis virus [TaxId:11002] [226177] (4 PDB entries)

8. Domain d3zeda_: 3zed A: [250762]
   automated match to d2yi9a_
   complexed with gol, k

Details for d3zeda_

PDB Entry: 3zed, 2.2 Å

PDB Description: X-ray structure of the birnavirus VP1-VP3 complex

PDB Compounds: (A:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d3zeda_:

Sequence, based on SEQRES records:

>d3zeda_ e.8.1.0 (A:) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
edvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlrqmved
gklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfptgpet
lrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlaklleqtlp
intpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdttaealvl
adsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrniwsapy
pthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldndedlvmiy
adniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwatfamn
vapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmtkefmd
leektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldllgwsai
ysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvggwnnpl
letaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlvdintp
ldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlrdqala
lkpasssvdnwaeateelaqqqqllmkannllkssltetrealeti

Sequence, based on observed residues (ATOM records):

>d3zeda_ e.8.1.0 (A:) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
edvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlrqmved
gklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfptgpet
lrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlaklleqtlp
intpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdttaealvl
adsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrniwsapy
pthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldndedlvmiy
adniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwatfamn
vapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmtkefmd
leektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldllgwsai
ysrqmemfvpvlenerliasaaypkglenkalarkpaeiayqivryeairlvggwnnpll
etaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlvdintpl
dsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlrdqalal
kpasssvdnwaeateelaqqqqllmkannllkssltetrealeti

Timeline for d3zeda_:

• d3zeda_ first appeared in SCOPe 2.04
  
• d3zeda_ appears in SCOPe 2.05
  
• d3zeda_ appears in SCOPe 2.07
  
• d3zeda_ appears in the current release, SCOPe 2.08