PDB entry 3zea

View 3zea on RCSB PDB site
Description: 3D structure of the NiFeSe hydrogenase from D. vulgaris Hildenborough in the reduced state at 1.82 Angstroms
Class: oxidoreductase
Keywords: oxidoreductase, hydrogenase biohydrogen oxygen tolerance
Deposited on 2012-12-03, released 2013-06-12
The last revision prior to the SCOPe 2.02 freeze date was dated 2013-06-12, with a file datestamp of 2013-06-07.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: 0.1249
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: periplasmic [nifese] hydrogenase, small subunit
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3zeaa_
  • Chain 'B':
    Compound: periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72AS3 (Start-483)
      • microheterogeneity (477)
      • microheterogeneity (477)
    Domains in SCOPe 2.02: d3zeab_
  • Heterogens: SF4, FCO, NI, FE2, H2S, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3zeaA (A:)
gtltgerppvfwlqgqgctgcsvtllnsvhpsiadvllkvislefhptvmawegehaieh
mrkvaekfkgkfflviegsvpveadgkyciigeanhheismvdalkefgpnaaavlavgt
caayggipaaegsetgatavskflgdngiktpvvnipgcpphpdwivgtvvlaldaikkn
glegglaevvkvldsdgrptpffgrnihencpyldkydegvmsatftdkvgcrydlgckg
pmtmadcferkwnggvnwcvqnavcigcvepdfpdgkspfyqa

    Sequence, based on observed residues (ATOM records): (download) 
    >3zeaA (A:)
gerppvfwlqgqgctgcsvtllnsvhpsiadvllkvislefhptvmawegehaiehmrkv
aekfkgkfflviegsvpveadgkyciigeanhheismvdalkefgpnaaavlavgtcaay
ggipaaegsetgatavskflgdngiktpvvnipgcpphpdwivgtvvlaldaikkngleg
glaevvkvldsdgrptpffgrnihencpyldkydegvmsatftdkvgcrydlgckgpmtm
adcferkwnggvnwcvqnavcigcvepdfpdgkspfyqa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3zeaB (B:)
gatgrttiaidpvtrieghlkaevvvengkvvdarlsggmyrgfetilrgrdprdasqiv
qricgvcptahstasvlaldeafgakvpnngritrnlifganylqshilhfyhlsaqdfv
qgpdtapfvprfpksdlrlskelnkagvdqyiealevrrichemvalfggrmphvqgqvv
ggateiptkeklveyaarfkkvrdfveqkyvpvvytigskykdmfkvgqgfkaalcvgaf
pldnsgkkhlfmpgvyakgkdmpfdpskikeyvkyswfaeettglnykegktipapdkag
aysfvkaprydglslevgplarmwvnnpelspvgkkllkdlfgisakkfrdlgeeaafsl
mgrhvaraeetyymlgaiegwlkeikagedtvvmpavpasaegtgfteaprgsllhyvkv
kdskidnyqivsaslwncnprddmgqrgaveealigipvddiqnpvnvarlirafdpclg
cavh

    Sequence, based on observed residues (ATOM records): (download) 
    >3zeaB (B:)
grttiaidpvtrieghlkaevvvengkvvdarlsggmyrgfetilrgrdprdasqivqri
cgvcptahstasvlaldeafgakvpnngritrnlifganylqshilhfyhlsaqdfvqgp
dtapfvprfpksdlrlskelnkagvdqyiealevrrichemvalfggrmphvqgqvvgga
teiptkeklveyaarfkkvrdfveqkyvpvvytigskykdmfkvgqgfkaalcvgafpld
nsgkkhlfmpgvyakgkdmpfdpskikeyvkyswfaeettglnykegktipapdkagays
fvkaprydglslevgplarmwvnnpelspvgkkllkdlfgisakkfrdlgeeaafslmgr
hvaraeetyymlgaiegwlkeikagedtvvmpavpasaegtgfteaprgsllhyvkvkds
kidnyqivsaslwncnprddmgqrgaveealigipvddiqnpvnvarlirafdpclgcav
h