PDB entry 3whd

View 3whd on RCSB PDB site
Description: C-type lectin, human MCL
Class: immune system
Keywords: c-type lectin, carbohydrate recognition, glycolipid binding, Plasmamembrane, IMMUNE SYSTEM
Deposited on 2013-08-24, released 2013-10-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-12-11, with a file datestamp of 2013-12-06.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: 0.178
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-type lectin domain family 4 member D
    Species: Homo sapiens [TaxId:9606]
    Gene: CLEC4D
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3whda_
  • Chain 'C':
    Compound: C-type lectin domain family 4 member D
    Species: Homo sapiens [TaxId:9606]
    Gene: CLEC4D
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8WXI8 (1-155)
      • expression tag (0)
    Domains in SCOPe 2.07: d3whdc1, d3whdc2
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3whdA (A:)
    mhaklkcikekselksaegstwnccpidwrafqsncyfpltdnktwaeserncsgmgahl
    mtisteaeqnfiiqfldrrlsyflglrdenakgqwrwvdqtpfnprrvfwhknepdnsqg
    encvvlvynqdkwawndvpcnfeasrickipgttln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3whdA (A:)
    haklkcikstwnccpidwrafqsncyfpltdnktwaeserncsgmgahlmtisteaeqnf
    iiqfldrrlsyflglrdenakgqwrwvdqtpfnprrvfwhknepdnsqgencvvlvynqd
    kwawndvpcnfeasrickipgttln
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3whdC (C:)
    mhaklkcikekselksaegstwnccpidwrafqsncyfpltdnktwaeserncsgmgahl
    mtisteaeqnfiiqfldrrlsyflglrdenakgqwrwvdqtpfnprrvfwhknepdnsqg
    encvvlvynqdkwawndvpcnfeasrickipgttln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3whdC (C:)
    mhaklkcikekstwnccpidwrafqsncyfpltdnktwaeserncsgmgahlmtisteae
    qnfiiqfldrrlsyflglrdenakgqwrwvdqtpfnprrvfwhknepdnsqgencvvlvy
    nqdkwawndvpcnfeasrickipgttln