PDB entry 3hw8
View 3hw8 on RCSB PDB site
Description: ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site
Class: transferase/DNA
Keywords: scrunch site, X-family, polymerase, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Lyase, Manganese, Metal-binding, Nucleotidyltransferase, Nucleus, Phosphoprotein, Polymorphism, Transferase, TRANSFERASE/DNA COMPLEX
Deposited on
2009-06-17, released
2009-08-25
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-08-25, with a file datestamp of
2009-08-21.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.212
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3hw8a1, d3hw8a2, d3hw8a3 - Chain 'B':
Compound: 5'-d(*cp*gp*gp*cp*cp*ap*ap*tp*ap*cp*tp*g)-3'
- Chain 'C':
Compound: 5'-d(*cp*ap*gp*tp*ap*t)-3'
- Chain 'D':
Compound: 5'-d(p*gp*cp*cp*g)-3'
- Heterogens: MG, NA, D3T, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3hw8A (A:)
maqpssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeac
sipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsl
edirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrr
gkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlp
gpgrrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnt
hgakvgpgrvlptptekdvfrllglpyrepaerdw
Sequence, based on observed residues (ATOM records): (download)
>3hw8A (A:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrr
ldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgakvgpg
rvlptptekdvfrllglpyrepaerdw
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.