PDB entry 3brd

View 3brd on RCSB PDB site
Description: CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121
Class: DNA binding protein/DNA
Keywords: protein-DNA complex, signaling, transcription, Notch, DNA-binding, ANK repeat, Developmental protein, Differentiation, EGF-like domain, Glycoprotein, Membrane, Transmembrane, DNA BINDING PROTEIN/DNA COMPLEX
Deposited on 2007-12-21, released 2008-04-01
The last revision prior to the SCOP 1.75 freeze date was dated 2008-06-03, with a file datestamp of 2008-05-30.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: 0.211
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lin-12 and glp-1 phenotype protein 1, isoform a
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: LAG-1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3brda1, d3brda2, d3brda3
  • Chain 'B':
    Compound: DNA (5'-d(*dtp*dtp*dap*dcp*dtp*dgp*dtp*dgp*dgp*dgp*dap*dap*dap*dgp*da)-3')
  • Chain 'C':
    Compound: DNA (5'-d(*dap*dap*dtp*dcp*dtp*dtp*dtp*dcp*dcp*dcp*dap*dcp*dap*dgp*dt)-3')
  • Chain 'D':
    Compound: Protein lin-12
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: lin-12
    Database cross-references and differences (RAF-indexed):
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3brdA (A:)
gplgsgdsvqsltsdrmidflsnkekyecvisifhakvaqksygnekrffcpppciylig
qgwklkkdrvaqlyktlkasaqkdaaiendpiheqqatelvayigigsdtserqqldfst
gkvrhpgdqrqdpniydycaaktlyisdsdkrkyfdlnaqffygcgmeiggfvsqrikvi
skpskkkqsmkntdckylciasgtkvalfnrlrsqtvstrylhvegnafhasstkwgaft
ihlfdderglqetdnfavrdgfvyygsvvklvdsvtgialprlrirkvdkqqvildascs
eepvsqlhkcafqmidnelvylclshdkiiqhqatainehrhqindgaawtiistdkaey
rffeamgqvanpispcpvvgslevdghgeasrvelhgrdfkpnlkvwfgatpvettfrse
eslhcsippvsqvrneqthwmftnrttgdvevpislvrddgvvyssgltfsyksler

    Sequence, based on observed residues (ATOM records): (download) 
    >3brdA (A:)
vqsltsdrmidflsnkekyecvisifhakvaqksygnekrffcpppciyligqgwklkkd
rvaqlyktlqqatelvayigigsdtserqqldfpniydycaaktlyisdsdkrkyfdlna
qffygcgmeiggfvsqrikviskpskkktdckylciasgtkvalfnrlrsqtvstrylhv
egnafhasstkwgaftihlfddqetdnfavrdgfvyygsvvklvdsvtgialprlrirkv
dkqqvildascseepvsqlhkcafqmidnelvylclshdkiiqhqatainehrhqindga
awtiistdkaeyrffeamgqvanpispcpvvgslevdghgeasrvelhgrdfkpnlkvwf
gatpvettfrseeslhcsippvsqvrneqthwmftnrttgdvevpislvrddgvvyssgl
tfsyksl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.