PDB entry 2v4j

View 2v4j on RCSB PDB site
Description: the crystal structure of desulfovibrio vulgaris dissimilatory sulfite reductase bound to dsrc provides novel insights into the mechanism of sulfate respiration
Class: oxidoreductase
Keywords: dissimilatory sulfite reductase, siroheme, oxidoreductase, sirohydrochlorin
Deposited on 2008-09-22, released 2008-09-30
The last revision prior to the SCOPe 2.04 freeze date was dated 2010-07-14, with a file datestamp of 2010-07-09.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.1916
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sulfite reductase, dissimilatory-type subunit alpha
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v4ja1, d2v4ja2, d2v4ja3
  • Chain 'B':
    Compound: sulfite reductase, dissimilatory-type subunit beta
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v4jb1, d2v4jb2, d2v4jb3
  • Chain 'C':
    Compound: sulfite reductase, dissimilatory-type subunit gamma
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v4jc1
  • Chain 'D':
    Compound: sulfite reductase, dissimilatory-type subunit alpha
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v4jd1, d2v4jd2, d2v4jd3
  • Chain 'E':
    Compound: sulfite reductase, dissimilatory-type subunit beta
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v4je1, d2v4je2, d2v4je3
  • Chain 'F':
    Compound: sulfite reductase, dissimilatory-type subunit gamma
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v4jf_
  • Heterogens: SF4, SRM, SO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2v4jA (A:)
makhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsyde
gethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcd
iwdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgk
srcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtw
kddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidn
kecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeike
vvekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeev
pggwdrditeyrkrhlr

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4jA (A:)
akhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsydeg
ethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcdi
wdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgks
rcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtwk
ddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidnk
ecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeikev
vekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeevp
ggwdrditeyrkrhlr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2v4jB (B:)
mafissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgd
kvytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlas
rkfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpa
pvrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptk
leigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfsk
vvvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshh
liddfrdpayytwrqstqfkf

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4jB (B:)
afissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgdk
vytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlasr
kfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpap
vrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptkl
eigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfskv
vvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshhl
iddfrdpayytwrqstqfkf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2v4jC (C:)
maevtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkn
giapmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4jC (C:)
evtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkngi
apmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2v4jD (D:)
makhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsyde
gethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcd
iwdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgk
srcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtw
kddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidn
kecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeike
vvekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeev
pggwdrditeyrkrhlr

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4jD (D:)
akhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsydeg
ethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcdi
wdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgks
rcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtwk
ddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidnk
ecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeikev
vekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeevp
ggwdrditeyrkrhlr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2v4jE (E:)
mafissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgd
kvytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlas
rkfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpa
pvrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptk
leigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfsk
vvvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshh
liddfrdpayytwrqstqfkf

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4jE (E:)
afissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgdk
vytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlasr
kfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpap
vrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptkl
eigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfskv
vvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshhl
iddfrdpayytwrqstqfkf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2v4jF (F:)
maevtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkn
giapmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4jF (F:)
evtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkngi
apmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv