PDB entry 1yx2
View 1yx2 on RCSB PDB site
Description: Crystal Structure of the Probable Aminomethyltransferase from Bacillus subtilis
Class: transferase
Keywords: aminomethyltransferase, glycine cleavage system T protein, alpha-beta, beta-barrel, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG
Deposited on
2005-02-19, released
2005-04-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.08 Å
R-factor: 0.219
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Aminomethyltransferase
Species: Bacillus subtilis [TaxId:1423]
Gene: gcvT
Database cross-references and differences (RAF-indexed):
- Uniprot P54378
- modified residue (54)
- modified residue (72)
- modified residue (89)
- modified residue (126)
- modified residue (207)
- conflict (239)
- modified residue (292)
Domains in SCOPe 2.06: d1yx2a1, d1yx2a2 - Chain 'B':
Compound: Aminomethyltransferase
Species: Bacillus subtilis [TaxId:1423]
Gene: gcvT
Database cross-references and differences (RAF-indexed):
- Uniprot P54378 (3-364)
- modified residue (3)
- modified residue (54)
- modified residue (72)
- modified residue (89)
- modified residue (126)
- modified residue (207)
- conflict (239)
- modified residue (292)
Domains in SCOPe 2.06: d1yx2b1, d1yx2b2 - Heterogens: EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1yx2A (A:)
snamlkrtplfdlykeyggktidfggwelpvqfssikkeheavrtaaglfdvshmgevev
sgndslsflqrlmtndvsaltpgraqytamcypdggtvddlliyqkgenryllvinasni
dkdlawmkehaagdvqidnqsdqiallavqgpkaeailknltdadvsalkpfafideadi
sgrkalisrtgytgedgyeiycrsddamhiwkkiidagdayglipcglgardtlrfeani
plygqeltrditpieagigfavkhkkesdffgksvlseqkengakrklvglemiekgipr
hgyevfqngksvgkvttgtqsptlgknvglalidsetseigtvvdveirkklvkakvvkt
pfykr
Sequence, based on observed residues (ATOM records): (download)
>1yx2A (A:)
lkrtplfdlykeyggktidfggwelpvqfssikkeheavrtaaglfdvshmgevevsgnd
slsflqrlmtndvsaltpgraqytamcypdggtvddlliyqkgenryllvinasnidkdl
awmkehaagdvqidnqsdqiallavqgpkaeailknltdadvsalkpfafideadisgrk
alisrtgytgedgyeiycrsddamhiwkkiidagdayglipcglgardtlrfeaniplyg
qeltrditpieagigfavkhkkesdffgksvlseqkengakrklvglemiekgiprhgye
vfqngksvgkvttgtqsptlgknvglalidsetseigtvvdveirkklvkakvvktpf
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1yx2B (B:)
snamlkrtplfdlykeyggktidfggwelpvqfssikkeheavrtaaglfdvshmgevev
sgndslsflqrlmtndvsaltpgraqytamcypdggtvddlliyqkgenryllvinasni
dkdlawmkehaagdvqidnqsdqiallavqgpkaeailknltdadvsalkpfafideadi
sgrkalisrtgytgedgyeiycrsddamhiwkkiidagdayglipcglgardtlrfeani
plygqeltrditpieagigfavkhkkesdffgksvlseqkengakrklvglemiekgipr
hgyevfqngksvgkvttgtqsptlgknvglalidsetseigtvvdveirkklvkakvvkt
pfykr
Sequence, based on observed residues (ATOM records): (download)
>1yx2B (B:)
mlkrtplfdlykeyggktidfggwelpvqfssikkeheavrtaaglfdvshmgevevsgn
dslsflqrlmtndvsaltpgraqytamcypdggtvddlliyqkgenryllvinasnidkd
lawmkehaagdvqidnqsdqiallavqgpkaeailknltdadvsalkpfafideadisgr
kalisrtgytgedgyeiycrsddamhiwkkiidagdayglipcglgardtlrfeaniply
gqeltrditpieagigfavkhkkesdffgksvlseqkengakrklvglemiekgiprhgy
evfqngksvgkvttgtqsptlgknvglalidsetseigtvvdveirkklvkakvvktpfy
kr