PDB entry 1v9u

View 1v9u on RCSB PDB site
Description: Human Rhinovirus 2 bound to a fragment of its cellular receptor protein
Class: Virus/Receptor
Keywords: human rhinovirus, VLDL-receptor, virus-protein complex, Icosahedral virus, Virus/Receptor COMPLEX
Deposited on 2004-02-03, released 2004-05-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.6 Å
R-factor: 0.285
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: coat protein vp1
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1v9u1_
  • Chain '2':
    Compound: coat protein vp2
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1v9u.1
  • Chain '3':
    Compound: coat protein vp3
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1v9u3_
  • Chain '4':
    Compound: coat protein vp4
    Species: Human rhinovirus 2 [TaxId:12130]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1v9u.1
  • Chain '5':
    Compound: LDL-receptor class A 3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1v9u5_
  • Heterogens: CA, DAO

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1v9u1 (1:)
npvenyidevlnevlvvpninssnpttsnsapaldaaetghtssvqpedvietryvqtsq
trdemslesflgrsgcihesklevtlanynkenftvwainlqemaqirrkfelftytrfd
seitlvpcisalsqdighitmqymyvppgapvpnsrddyawqsgtnasvfwqhgqayprf
slpflsvasayymfydgydeqdqnygtantnnmgslcsrivtekhihkvhimtriyhkak
hvkawcprppraleytrahrtnfkiedrsiqtaivtrpiittagpsdmy

    Sequence, based on observed residues (ATOM records): (download) 
    >1v9u1 (1:)
lvvpninssnpttsnsapaldaaetghtssvqpedvietryvqtsqtrdemslesflgrs
gcihesklevtlanynkenftvwainlqemaqirrkfelftytrfdseitlvpcisalsq
dighitmqymyvppgapvpnsrddyawqsgtnasvfwqhgqayprfslpflsvasayymf
ydgydeqdqnygtantnnmgslcsrivtekhihkvhimtriyhkakhvkawcprpprale
ytrahrtnfkiedrsiqtaivtrpiitta

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1v9u2 (2:)
sptveacgysdriiqitrgdstitsqdvanaivaygvwphylsskdasaidkpsqpdtss
nrfytlrsvtwsssskgwwwklpdalkdmgifgenmfyhylgrsgytihvqcnaskfhqg
tlivalipehqiasalhgnvnvgynythpgetgrevkaetrlnpdlqpteeywlnfdgtl
lgnitifphqfinlrsnnsatiiapyvnavpmdsmrshnnwslviipicpletssainti
pitisispmcaefsgarakrq

    Sequence, based on observed residues (ATOM records): (download) 
    >1v9u2 (2:)
riiqitrgdstitsqdvanaivaygvwphylsskdasaidkpsqpdtssnrfytlrsvtw
sssskgwwwklpdalkdmgifgenmfyhylgrsgytihvqcnaskfhqgtlivalipehq
iasalhgnvnvgynythpgetgrevkaetrlnpdlqpteeywlnfdgtllgnitifphqf
inlrsnnsatiiapyvnavpmdsmrshnnwslviipicpletssaintipitisispmca
efsgarakrq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1v9u3 (3:)
glpvfitpgsgqflttddfqspcalpwyhptkeisipgevknlveicqvdslvpinntdt
yinsenmysvvlqssinapdkifsirtdvasqplattligeissyfthwtgslrfsfmfc
gtanttvklllaytppgiaepttrkdamlgthviwdvglqstismvvpwisashyrntsp
grstsgyitcwyqtrlvippqtpptarllcfvsgckdfclrmardtnlhlqsgaiaq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1v9u4 (4:)
gaqvsrqnvgthstqnsvsngsslnyfninyfkdaasngaskleftqdpskftdpvkdvl
ekgiptlq

    Sequence, based on observed residues (ATOM records): (download) 
    >1v9u4 (4:)
aqvsrqnyfninyfkdaasngaskl

  • Chain '5':
    Sequence, based on SEQRES records: (download) 
    >1v9u5 (5:)
rtcriheiscgahstqcipvswrcdgendcdsgedeencgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1v9u5 (5:)
criheiscgahstqcipvswrcdgendcdsgedeencgn