PDB entry 1oyp

View 1oyp on RCSB PDB site
Description: Crystal Structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis
Class: transferase
Keywords: Transferase, tRNA processing
Deposited on 2003-04-07, released 2004-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.76 Å
R-factor: 0.285
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oypa1, d1oypa2
  • Chain 'B':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oypb1, d1oypb2
  • Chain 'C':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oypc1, d1oypc2
  • Chain 'D':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oypd1, d1oypd2
  • Chain 'E':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oype1, d1oype2
  • Chain 'F':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1oypf1, d1oypf2
  • Heterogens: SO4

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1oypA (A:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oypA (A:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlsgrtmeiqrligralravvdleklgertiwidcdviqadggtrtasitgaflam
aiaigklikagtiktnpitdflaaisvgidkeqgilldlnyeedssaevdmnvimtgsgr
fvelqgtgeeatfsredlngllglaekgiqelidkqkevlgdslpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1oypB (B:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oypB (B:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlsgrtmeiqrligralravvdleklgertiwidcdviqadggtrtasitgaflam
aiaigklikagtiktnpitdflaaisvgidkeqgilldlnyeedssaevdmnvimtgsgr
fvelqgtgeeatfsredlngllglaekgiqelidkqkevlgdslpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1oypC (C:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oypC (C:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlsgrtmeiqrligralravvdleklgertiwidcdviqadggtrtasitgaflam
aiaigklikagtiktnpitdflaaisvgidkeqgilldlnyeedssaevdmnvimtgsgr
fvelqgtgeeatfsredlngllglaekgiqelidkqkevlgdslpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1oypD (D:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oypD (D:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlsgrtmeiqrligralravvdleklgertiwidcdviqadggtrtasitgaflam
aiaigklikagtiktnpitdflaaisvgidkeqgilldlnyeedssaevdmnvimtgsgr
fvelqgtgeeatfsredlngllglaekgiqelidkqkevlgdslpe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1oypE (E:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oypE (E:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlsgrtmeiqrligralravvdleklgertiwidcdviqadggtrtasitgaflam
aiaigklikagtiktnpitdflaaisvgidkeqgilldlnyeedssaevdmnvimtgsgr
fvelqgtgeeatfsredlngllglaekgiqelidkqkevlgdslpe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1oypF (F:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oypF (F:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlsgrtmeiqrligralravvdleklgertiwidcdviqadggtrtasitgaflam
aiaigklikagtiktnpitdflaaisvgidkeqgilldlnyeedssaevdmnvimtgsgr
fvelqgtgeeatfsredlngllglaekgiqelidkqkevlgdslpe