PDB entry 1fka

View 1fka on RCSB PDB site
Description: structure of functionally activated small ribosomal subunit at 3.3 a resolution
Class: ribosome
Keywords: 30S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, ribosome
Deposited on 2000-08-09, released 2000-09-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.304
AEROSPACI score: 0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 16S ribosomal RNA
    Species: Thermus thermophilus [TaxId:274]
  • Chain 'B':
    Compound: 30S ribosomal protein S2
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-110)
    Domains in SCOPe 2.08: d1fkab_
  • Chain 'C':
    Compound: 30S ribosomal protein S3
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-175)
    Domains in SCOPe 2.08: d1fkac_
  • Chain 'D':
    Compound: 30S ribosomal protein S4
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1fkad_
  • Chain 'E':
    Compound: 30S ribosomal protein S5
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1fkae_
  • Chain 'F':
    Compound: 30S ribosomal protein S6
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1fkaf_
  • Chain 'G':
    Compound: 30S ribosomal protein S7
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1fkag_
  • Chain 'H':
    Compound: 30S ribosomal protein S8
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P24319 (Start-137)
      • conflict (24)
      • conflict (36)
      • conflict (51)
      • conflict (60-61)
      • conflict (80)
      • conflict (87)
      • conflict (114)
    Domains in SCOPe 2.08: d1fkah_
  • Chain 'I':
    Compound: 30S ribosomal protein S9
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-88)
    Domains in SCOPe 2.08: d1fkai_
  • Chain 'J':
    Compound: 30S ribosomal protein S10
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (Start-70)
    Domains in SCOPe 2.08: d1fkaj_
  • Chain 'K':
    Compound: 30S ribosomal protein S11
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-69)
    Domains in SCOPe 2.08: d1fkak_
  • Chain 'L':
    Compound: 30S ribosomal protein S12
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-102)
    Domains in SCOPe 2.08: d1fkal_
  • Chain 'M':
    Compound: 30S ribosomal protein S13
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-76)
    Domains in SCOPe 2.08: d1fkam_
  • Chain 'N':
    Compound: 30S ribosomal protein S14
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-25)
    Domains in SCOPe 2.08: d1fkan_
  • Chain 'O':
    Compound: 30S ribosomal protein S15
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80378 (Start-88)
      • conflict (79-81)
      • conflict (86)
    Domains in SCOPe 2.08: d1fkao_
  • Chain 'P':
    Compound: 30S ribosomal protein S16
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-72)
    Domains in SCOPe 2.08: d1fkap_
  • Chain 'Q':
    Compound: 30S ribosomal protein S17
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-83)
    Domains in SCOPe 2.08: d1fkaq_
  • Chain 'R':
    Compound: 30S ribosomal protein S18
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • GB AAF27297
    Domains in SCOPe 2.08: d1fkar_
  • Chain 'S':
    Compound: 30S ribosomal protein S19
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1fkas_
  • Chain 'T':
    Compound: 30S ribosomal protein S20
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1FKA (0-94)
    Domains in SCOPe 2.08: d1fkat_
  • Heterogens: WO2

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaB (B:)
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  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaC (C:)
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  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1fkaD (D:)
mgryigpvcrlcrregvklylkgercyspkcamerrpyppgqhgqkrarrpsdyavrlre
kqklrriygiserqfrnlfeeaskkkgvtgsvflgllesrldnvvyrlgfavsrrqarql
vrhghitvngrrvdlpsyrvrpgdeiavaeksrnlelirqnleamkgrkvgpwlsldveg
mkgkflrlpdredlalpvneqlviefysr

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaD (D:)
rrpsdyavrlrekqklrriygiserqfrnlfeeaskkkgvtgsvflgllesrldnvvyrl
gfavsrrqarqlvrhghitvngrrvdlpsyrvrpgdeiavaeksrnlelirqnleamkgr
kvgpwlsldvegmkgkflrlpdredlalpvneqlviefysr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1fkaE (E:)
mpetdfeekmilirrtarmqaggrrfrfgalvvvgdrqgrvglgfgkapevplavqkagy
yarrnmvevplqngtipheievefgaskivlkpaapgtgviagavprailelagvtdilt
kelgsrnpiniayatmealrqlrtkadverlrkgeahaqaqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaE (E:)
mpetdfeekmilirrtarmqaggrrfrfgalvvvgdrqgrvglgfgkapevplavqkagy
yarrnmvevplqngtipheievefgaskivlkpaapgtgviagavprailelagvtdilt
kelgsrnpiniayatmealrqlrtkadverlrkgeah

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1fkaF (F:)
mrryevnivlnpnldqsqlalekeiiqralenygarvekveelglrrlaypiakdpqgyf
lwyqvempedrvndlarelrirdnvrrvmvvksqepflana

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaF (F:)
mrryevnivlnpnldqsqlalekeiiqralenygarvekveelglrrlaypiakdpqgyf
lwyqvempedrvndlarelrirdnvrrvmvvksqepf

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1fkaG (G:)
marrrraevrqlqpdlvygdvlvtafinkimrdgkknlaarifydackiiqektgqeplk
vfkqavenvkprmevrsrrvgganyqvpmevsprrqqslalrwlvqaanqrperraavri
ahelmdaaegkggavkkkedvermaeanray

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaG (G:)
rrrraevrqlqpdlvygdvlvtafinkimrdgkknlaarifydackiiqektgqeplkvf
kqavenvkprmevsprrqqslalrwlvqaanqrperraavriahelmdaaegkggavkkk
edvermae

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1fkaH (H:)
mltdpiadmltrirnatrvykestdvpasrfkeeilrilaregfikgyervdvdgkpylr
vylkygprrqgpdprpeqvihhirriskpgrrvyvgvkeiprvrrglgiailstskgvlt
drearklgvggelicevw

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaH (H:)
tdpiadmltrirnatrvykestdvpasrfkeeilrilaregfikgyervdvdgkpylrvy
lkygprrqgpdprpeqvihhirriskpgrrvyvgvkeiprvrrglgiailstskgvltdr
earklgvggelicevw

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaI (I:)
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  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1fkaJ (J:)
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    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaJ (J:)
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  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaK (K:)
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  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaL (L:)
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  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaM (M:)
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  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaN (N:)
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  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1fkaO (O:)
mpitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmv
gqrrrllrylqredperyreiveklglrg

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaO (O:)
pitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmvg
qrrrllrylqredperyreiveklglrg

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaP (P:)
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  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaQ (Q:)
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  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1fkaR (R:)
mstknakpkkeaqrrpsrkakvkatlgefdlrdyrnvevlkrflsetgkilprrrtglsg
keqrilaktikrarilgllpfteklvrk

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaR (R:)
rnvevlkrflsetgkilprrrtglsgkeqrilaktikrarilgllpftek

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1fkaS (S:)
mprslkkgvfvddhllekvlelnakgekrliktwsrrstivpemvghtiavyngkqhvpv
yitenmvghklgefaptrtyrghgkeakatkkk

    Sequence, based on observed residues (ATOM records): (download) 
    >1fkaS (S:)
gvfvddhllekvlelnakgekrliktwsrrstivpemvghtiavyngkqhvpvyitenmv
ghklgefaptrty

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fkaT (T:)
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