Lineage for Species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
- Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds) 
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families) 
duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
Family b.121.2.3: Major capsid protein vp54 [82013] (2 proteins) Protein Major capsid protein vp54 [82014] (1 species) Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] [82015] (1 PDB entry)
a large, lipid-containing, DNA virus
PDB entry in Species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]:
- Domain(s) for 1m3y:
Domain d1m3ya1: 1m3y A:25-221 [78579]
complexed with hg, man, nag, ndg
Domain d1m3ya2: 1m3y A:222-437 [78580]
complexed with hg, man, nag, ndg
Domain d1m3yb1: 1m3y B:25-221 [78581]
complexed with hg, man, nag, ndg
Domain d1m3yb2: 1m3y B:222-437 [78582]
complexed with hg, man, nag, ndg
Domain d1m3yc1: 1m3y C:25-221 [78583]
complexed with hg, man, nag, ndg
Domain d1m3yc2: 1m3y C:222-437 [78584]
complexed with hg, man, nag, ndg
Domain d1m3yd1: 1m3y D:25-221 [78585]
complexed with hg, man, nag, ndg
Domain d1m3yd2: 1m3y D:222-437 [78586]
complexed with hg, man, nag, ndg
More info for Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54
Timeline for Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54:
- Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54 first appeared in SCOP 1.63, called Species Paramecium bursaria chorella virus type 1, PBCV-1 from b.13.2.3 Major capsid protein vp54
- Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54 appears in SCOPe 2.06
- Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54 appears in the current release, SCOPe 2.08