Lineage for Species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075469Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families) (S)
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
  5. 2075525Family b.121.2.3: Major capsid protein vp54 [82013] (2 protein domains)
  6. 2075526Protein Major capsid protein vp54 [82014] (1 species)
  7. 2075527Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] [82015] (2 PDB entries)
    a large, lipid-containing, DNA virus

PDB entries in Species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]:

  1. Domain(s) for 1j5q:
    1. 2075536Domain d1j5qa1: 1j5q A:25-221 [77084]
      complexed with hg, man, nag, ndg
    2. 2075537Domain d1j5qa2: 1j5q A:222-437 [77085]
      complexed with hg, man, nag, ndg
    3. 2075538Domain d1j5qb1: 1j5q B:25-221 [77086]
      complexed with hg, man, nag, ndg
    4. 2075539Domain d1j5qb2: 1j5q B:222-437 [77087]
      complexed with hg, man, nag, ndg
  2. Domain(s) for 1m3y:
    1. 2075528Domain d1m3ya1: 1m3y A:25-221 [78579]
      complexed with hg, man, nag, ndg
    2. 2075529Domain d1m3ya2: 1m3y A:222-437 [78580]
      complexed with hg, man, nag, ndg
    3. 2075530Domain d1m3yb1: 1m3y B:25-221 [78581]
      complexed with hg, man, nag, ndg
    4. 2075531Domain d1m3yb2: 1m3y B:222-437 [78582]
      complexed with hg, man, nag, ndg
    5. 2075532Domain d1m3yc1: 1m3y C:25-221 [78583]
      complexed with hg, man, nag, ndg
    6. 2075533Domain d1m3yc2: 1m3y C:222-437 [78584]
      complexed with hg, man, nag, ndg
    7. 2075534Domain d1m3yd1: 1m3y D:25-221 [78585]
      complexed with hg, man, nag, ndg
    8. 2075535Domain d1m3yd2: 1m3y D:222-437 [78586]
      complexed with hg, man, nag, ndg

More info for Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54

Timeline for Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] from b.121.2.3 Major capsid protein vp54: