SCOPe 2.04: Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.129: TBP-like [55944] (11 superfamilies)
beta-alpha-beta(4)-alpha
Superfamily d.129.1: TATA-box binding protein-like [55945] (3 families)
Family d.129.1.1: TATA-box binding protein (TBP), C-terminal domain [55946] (1 protein)
duplication: consists of two clear structural repeats
automatically mapped to Pfam PF00352
Protein TATA-box binding protein (TBP), C-terminal domain [55947] (5 species)
structure of the N-terminal domain is not known yet
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55950] (7 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

Domain(s) for 1ngm:
1. Domain d1ngma1: 1ngm A:61-155 [85685]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
2. Domain d1ngma2: 1ngm A:156-240 [85686]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
3. Domain d1ngme1: 1ngm E:61-155 [85688]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
4. Domain d1ngme2: 1ngm E:156-240 [85689]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
5. Domain d1ngmi1: 1ngm I:61-155 [85691]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
6. Domain d1ngmi2: 1ngm I:156-240 [85692]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
7. Domain d1ngmm1: 1ngm M:61-155 [85694]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
8. Domain d1ngmm2: 1ngm M:156-240 [85695]
  Other proteins in same PDB: d1ngmb_, d1ngmf_, d1ngmj_, d1ngmn_
  a ternary complex with DNA and Brf1 peptide
  protein/DNA complex
Domain(s) for 1nh2:
1. Domain d1nh2a1: 1nh2 A:61-155 [91872]
  Other proteins in same PDB: d1nh2b_, d1nh2c_, d1nh2d1, d1nh2d2
  protein/DNA complex
2. Domain d1nh2a2: 1nh2 A:156-240 [91873]
  Other proteins in same PDB: d1nh2b_, d1nh2c_, d1nh2d1, d1nh2d2
  protein/DNA complex
Domain(s) for 1rm1:
1. Domain d1rm1a1: 1rm1 A:61-148 [118778]
  Other proteins in same PDB: d1rm1b1, d1rm1b2
  automated match to d1mp9b1
  protein/DNA complex
2. Domain d1rm1a2: 1rm1 A:149-240 [118779]
  Other proteins in same PDB: d1rm1b1, d1rm1b2
  automated match to d1mp9b2
  protein/DNA complex
Domain(s) for 1tba:
1. Domain d1tbab1: 1tba B:61-155 [41286]
  Other proteins in same PDB: d1tbaa_
2. Domain d1tbab2: 1tba B:156-240 [41287]
  Other proteins in same PDB: d1tbaa_
Domain(s) for 1tbp:
1. Domain d1tbpa1: 1tbp A:61-155 [41282]
2. Domain d1tbpa2: 1tbp A:156-240 [41283]
3. Domain d1tbpb1: 1tbp B:61-155 [41284]
4. Domain d1tbpb2: 1tbp B:156-240 [41285]
Domain(s) for 1ytb:
1. Domain d1ytba1: 1ytb A:61-155 [41276]
  complexed with DNA containing TATA-box
  protein/DNA complex
2. Domain d1ytba2: 1ytb A:156-240 [41277]
  complexed with DNA containing TATA-box
  protein/DNA complex
3. Domain d1ytbb1: 1ytb B:61-155 [41278]
  complexed with DNA containing TATA-box
  protein/DNA complex
4. Domain d1ytbb2: 1ytb B:156-240 [41279]
  complexed with DNA containing TATA-box
  protein/DNA complex
Domain(s) for 1ytf:
1. Domain d1ytfa1: 1ytf A:61-155 [41280]
  Other proteins in same PDB: d1ytfb_, d1ytfc_, d1ytfd1, d1ytfd2
  protein/DNA complex
2. Domain d1ytfa2: 1ytf A:156-240 [41281]
  Other proteins in same PDB: d1ytfb_, d1ytfc_, d1ytfd1, d1ytfd2
  protein/DNA complex

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain:

Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain first appeared (with stable ids) in SCOP 1.55
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain appears in SCOPe 2.03
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain appears in SCOPe 2.05
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.129.1.1 TATA-box binding protein (TBP), C-terminal domain appears in the current release, SCOPe 2.08