SCOPe 2.08: Family d.58.8.1: Viral DNA-binding domain

Lineage for Family d.58.8.1: Viral DNA-binding domain

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.8: Viral DNA-binding domain [54957] (1 family)

5. Family d.58.8.1: Viral DNA-binding domain [54958] (3 proteins)

Proteins:

1. Epstein barr virus nuclear antigen-1 (ebna1) [54964] (2 species)
   DNA-binding mode differs from that of E2 protein

   1. Species Epstein-barr virus (strain b95-8) [TaxId:10377] [385181] (5 PDB entries)

   2. Species Epstein-Barr virus [TaxId:10376] [54965] (2 PDB entries)

2. Papillomavirus-1 E2 protein [54959] (5 species)
   forms dimers with subunit beta-sheets making (8,12) barrel

   1. Species Bovine papillomavirus type 1 [TaxId:10559] [54960] (4 PDB entries)

   2. Species Human papillomavirus type 16 [TaxId:333760] [54962] (5 PDB entries)
      Uniprot P03120 286-365

   3. Species Human papillomavirus type 18 [TaxId:333761] [54963] (2 PDB entries)

   4. Species Human papillomavirus type 31 [TaxId:10585] [54961] (2 PDB entries)

   5. Species Human papillomavirus type 6a [TaxId:37122] [102990] (4 PDB entries)

3. automated matches [337642] (1 species)
   not a true protein

   • Species Epstein-barr virus (strain b95-8) [TaxId:10377] [366599] (1 PDB entry)

More info for Family d.58.8.1: Viral DNA-binding domain

Timeline for Family d.58.8.1: Viral DNA-binding domain:

• Family d.58.8.1: Viral DNA-binding domain first appeared (with stable ids) in SCOP 1.55
  
• Family d.58.8.1: Viral DNA-binding domain appears in SCOPe 2.07