Lineage for Species: Escherichia coli [TaxId: 562]
- Root: SCOP 1.75
Class c: Alpha and beta proteins (a/b) [51349] (147 folds) 
Fold c.72: Ribokinase-like [53612] (3 superfamilies)
core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
potential superfamily: members of this fold have similar functions but different ATP-binding sites
Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (2 families) 
has extra strand located between strands 1 and 2Family c.72.2.1: MurCDEF [53624] (4 proteins) Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625] (1 species) Species Escherichia coli [TaxId:562] [53626] (11 PDB entries)
PDB entries in Species: Escherichia coli [TaxId: 562]:
- Domain(s) for 1e0d:
Domain d1e0da3: 1e0d A:94-297 [34959]
Other proteins in same PDB: d1e0da1, d1e0da2
complexed with so4
- Domain(s) for 1eeh:
Domain d1eeha3: 1eeh A:94-297 [34958]
Other proteins in same PDB: d1eeha1, d1eeha2
complexed with uma
- Domain(s) for 1uag:
Domain d1uaga3: 1uag A:94-297 [34957]
Other proteins in same PDB: d1uaga1, d1uaga2
complexed with so4, uma
- Domain(s) for 2jff:
Domain d2jffa3: 2jff A:94-297 [138305]
Other proteins in same PDB: d2jffa1, d2jffa2
automatically matched to d1e0da3
complexed with lk2, so4
- Domain(s) for 2jfg:
Domain d2jfga3: 2jfg A:94-297 [138308]
Other proteins in same PDB: d2jfga1, d2jfga2
automatically matched to d1e0da3
complexed with adp, so4, uma
- Domain(s) for 2jfh:
Domain d2jfha3: 2jfh A:94-297 [138311]
Other proteins in same PDB: d2jfha1, d2jfha2
automatically matched to d1e0da3
complexed with lk1, so4
- Domain(s) for 2uag:
Domain d2uaga3: 2uag A:94-297 [34954]
Other proteins in same PDB: d2uaga1, d2uaga2
complexed with adp, mg, uma
- Domain(s) for 2uuo:
Domain d2uuoa3: 2uuo A:94-297 [152199]
Other proteins in same PDB: d2uuoa1, d2uuoa2
automatically matched to d1e0da3
complexed with lk3, so4
- Domain(s) for 2uup:
Domain d2uupa3: 2uup A:94-297 [152202]
Other proteins in same PDB: d2uupa1, d2uupa2
automatically matched to d1e0da3
complexed with lk4, so4
- Domain(s) for 3uag:
Domain d3uaga3: 3uag A:94-297 [34956]
Other proteins in same PDB: d3uaga1, d3uaga2
complexed with adp, epe, mn, uma
- Domain(s) for 4uag:
Domain d4uaga3: 4uag A:94-297 [34955]
Other proteins in same PDB: d4uaga1, d4uaga2
complexed with so4, uag, unx
More info for Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
Timeline for Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD:
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD first appeared (with stable ids) in SCOP 1.55, called Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase, gene MurD
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD appears in SCOP 1.73
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD appears in SCOPe 2.01
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD appears in the current release, SCOPe 2.08