SCOPe 2.02: Protein: Phosphoglycerate dehydrogenase

Lineage for Protein: Phosphoglycerate dehydrogenase

Root: SCOPe 2.02
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
Superfamily c.23.12: Formate/glycerate dehydrogenase catalytic domain-like [52283] (3 families)
Family c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain [52284] (7 proteins)
this domain is interrupted by the Rossmann-fold domain
Protein Phosphoglycerate dehydrogenase [52293] (2 species)
has additional C-terminal domain of the ferredoxin fold

Species:

Escherichia coli [TaxId:562] [52294] (7 PDB entries)

Domains for 1psd:
1. Domain d1psda2: 1psd A:7-107,A:296-326 [31357]
  Other proteins in same PDB: d1psda1, d1psda3, d1psdb1, d1psdb3
  complexed with nad, ser
2. Domain d1psdb2: 1psd B:7-107,B:296-326 [31358]
  Other proteins in same PDB: d1psda1, d1psda3, d1psdb1, d1psdb3
  complexed with nad, ser
Domains for 1sc6:
1. Domain d1sc6a2: 1sc6 A:7-107,A:296-326 [118933]
  Other proteins in same PDB: d1sc6a1, d1sc6a3, d1sc6b1, d1sc6b3, d1sc6c1, d1sc6c3, d1sc6d1, d1sc6d3
  automatically matched to d1psda2
  complexed with nad
2. Domain d1sc6b2: 1sc6 B:7-107,B:296-326 [118936]
  Other proteins in same PDB: d1sc6a1, d1sc6a3, d1sc6b1, d1sc6b3, d1sc6c1, d1sc6c3, d1sc6d1, d1sc6d3
  automatically matched to d1psda2
  complexed with nad
3. Domain d1sc6c2: 1sc6 C:9-107,C:299-326 [118939]
  Other proteins in same PDB: d1sc6a1, d1sc6a3, d1sc6b1, d1sc6b3, d1sc6c1, d1sc6c3, d1sc6d1, d1sc6d3
  automatically matched to d1psda2
  complexed with nad
4. Domain d1sc6d2: 1sc6 D:7-107,D:296-326 [118942]
  Other proteins in same PDB: d1sc6a1, d1sc6a3, d1sc6b1, d1sc6b3, d1sc6c1, d1sc6c3, d1sc6d1, d1sc6d3
  automatically matched to d1psda2
  complexed with nad

Domains for 1yba:

Domain d1ybaa2: 1yba A:7-107,A:296-326 [122873]
Other proteins in same PDB: d1ybaa1, d1ybaa3, d1ybab1, d1ybab3, d1ybac1, d1ybac3, d1ybad1, d1ybad3
automatically matched to d1psda2
complexed with akg, nad, po4, unl

Domain d1ybab2: 1yba B:7-107,B:296-326 [122876]
Other proteins in same PDB: d1ybaa1, d1ybaa3, d1ybab1, d1ybab3, d1ybac1, d1ybac3, d1ybad1, d1ybad3
automatically matched to d1psda2
complexed with akg, nad, po4, unl

Domain d1ybac2: 1yba C:7-107,C:296-326 [122879]
Other proteins in same PDB: d1ybaa1, d1ybaa3, d1ybab1, d1ybab3, d1ybac1, d1ybac3, d1ybad1, d1ybad3
automatically matched to d1psda2
complexed with akg, nad, po4, unl

Domain d1ybad2: 1yba D:7-107,D:296-326 [122882]
Other proteins in same PDB: d1ybaa1, d1ybaa3, d1ybab1, d1ybab3, d1ybac1, d1ybac3, d1ybad1, d1ybad3
automatically matched to d1psda2
complexed with akg, nad, po4, unl

Domains for 2p9c:
1. Domain d2p9ca2: 2p9c A:7-107,A:296-326 [139557]
  Other proteins in same PDB: d2p9ca1, d2p9ca3, d2p9cb1, d2p9cb3
  automatically matched to d1psda2
  complexed with nai, ser; mutant
2. Domain d2p9cb2: 2p9c B:7-107,B:296-326 [139560]
  Other proteins in same PDB: d2p9ca1, d2p9ca3, d2p9cb1, d2p9cb3
  automatically matched to d1psda2
  complexed with nai, ser; mutant

Domains for 2p9e:

Domain d2p9ea2: 2p9e A:7-107,A:296-326 [139563]
Other proteins in same PDB: d2p9ea1, d2p9ea3, d2p9eb1, d2p9eb3, d2p9ec1, d2p9ec3, d2p9ed1, d2p9ed3
automatically matched to d1psda2
complexed with cit, nai, po4, so4; mutant

Domain d2p9eb2: 2p9e B:7-107,B:296-326 [139566]
Other proteins in same PDB: d2p9ea1, d2p9ea3, d2p9eb1, d2p9eb3, d2p9ec1, d2p9ec3, d2p9ed1, d2p9ed3
automatically matched to d1psda2
complexed with cit, nai, po4, so4; mutant

Domain d2p9ec2: 2p9e C:7-107,C:296-326 [139569]
Other proteins in same PDB: d2p9ea1, d2p9ea3, d2p9eb1, d2p9eb3, d2p9ec1, d2p9ec3, d2p9ed1, d2p9ed3
automatically matched to d1psda2
complexed with cit, nai, po4, so4; mutant

Domain d2p9ed2: 2p9e D:8-107,D:296-326 [139572]
Other proteins in same PDB: d2p9ea1, d2p9ea3, d2p9eb1, d2p9eb3, d2p9ec1, d2p9ec3, d2p9ed1, d2p9ed3
automatically matched to d1psda2
complexed with cit, nai, po4, so4; mutant

Domains for 2p9g:
1. Domain d2p9ga2: 2p9g A:7-107,A:296-326 [139575]
  Other proteins in same PDB: d2p9ga1, d2p9ga3, d2p9gb1, d2p9gb3
  automatically matched to d1psda2
  complexed with nai, ser; mutant
2. Domain d2p9gb2: 2p9g B:7-107,B:296-326 [139578]
  Other proteins in same PDB: d2p9ga1, d2p9ga3, d2p9gb1, d2p9gb3
  automatically matched to d1psda2
  complexed with nai, ser; mutant
Domain for 2pa3:
- Domain d2pa3a2: 2pa3 A:7-107,A:296-326 [139639]
  Other proteins in same PDB: d2pa3a1, d2pa3a3
  automatically matched to d1psda2
  complexed with nai, ser; mutant

Mycobacterium tuberculosis [TaxId:1773] [142063] (1 PDB entry)
Uniprot P0A544 2-97,282-315
there is an intervening domain between this domain and regulatory (C-terminal) domain
- Domains for 1ygy:
  1. Domain d1ygya2: 1ygy A:3-98,A:283-316 [123151]
    Other proteins in same PDB: d1ygya1, d1ygya3, d1ygya4, d1ygyb1, d1ygyb3, d1ygyb4
    complexed with tar
  2. Domain d1ygyb2: 1ygy B:3-98,B:283-316 [123155]
    Other proteins in same PDB: d1ygya1, d1ygya3, d1ygya4, d1ygyb1, d1ygyb3, d1ygyb4
    automatically matched to 1YGY A:3-98,A:283-316
    complexed with tar

More info for Protein Phosphoglycerate dehydrogenase from c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain

Timeline for Protein Phosphoglycerate dehydrogenase from c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain:

Protein Phosphoglycerate dehydrogenase from c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain first appeared (with stable ids) in SCOP 1.55
Protein Phosphoglycerate dehydrogenase from c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain appears in SCOPe 2.01
Protein Phosphoglycerate dehydrogenase from c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain appears in SCOPe 2.03
Protein Phosphoglycerate dehydrogenase from c.23.12.1: Formate/glycerate dehydrogenases, substrate-binding domain appears in the current release, SCOPe 2.08