Lineage for Family c.1.10.1: Class I aldolase

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1821671Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 1821672Family c.1.10.1: Class I aldolase [51570] (13 proteins)
    the catalytic lysine forms schiff-base intermediate with substrate
    possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels

Proteins:

  1. 18216732-keto-3-deoxy gluconate aldolase Eda [110360] (1 species)
  2. 1821691Archaeal fructose 1,6-bisphosphate aldolase [102088] (1 species)
  3. 1821734Decameric fructose-6-phosphate aldolase/transaldolase [75085] (3 species)
    forms helix-swapped pentamers
    1. 1821735Species Escherichia coli [TaxId:562] [75086] (1 PDB entry)
    2. 1821746Species Thermotoga maritima [TaxId:2336] [117379] (1 PDB entry)
      Uniprot Q9WYD1
    3. 1821767Species Thermus thermophilus [TaxId:274] [141836] (1 PDB entry)
      Uniprot Q5SJE8 1-211
      clear orthologue of the E.coli protein; annotated as transaldolase in UniProt
  4. 1821769Deoxyribose-phosphate aldolase DeoC [69394] (6 species)
    1. 1821770Species Aeropyrum pernix [TaxId:56636] [89493] (1 PDB entry)
    2. 1821773Species Aquifex aeolicus [TaxId:63363] [82271] (1 PDB entry)
    3. 1821776Species Escherichia coli [TaxId:562] [69395] (4 PDB entries)
      Uniprot P00882
    4. 1821785Species Pyrobaculum aerophilum [TaxId:13773] [141830] (1 PDB entry)
      Uniprot Q8ZXK7 1-226
    5. 1821787Species Thermotoga maritima [TaxId:2336] [82270] (2 PDB entries)
      TM1559
    6. 1821792Species Thermus thermophilus [TaxId:274] [89492] (2 PDB entries)
  5. 1821801Dihydrodipicolinate synthase [51574] (12 species)
    1. 1821802Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [141832] (2 PDB entries)
      Uniprot Q81WN7 1-292
    2. 1821811Species Campylobacter jejuni [TaxId:192222] [189204] (1 PDB entry)
    3. 1821816Species Clostridium botulinum [TaxId:441770] [189380] (1 PDB entry)
    4. 1821819Species Clostridium botulinum [TaxId:441771] [189048] (1 PDB entry)
    5. 1821821Species Corynebacterium glutamicum [TaxId:1718] [188663] (1 PDB entry)
    6. 1821824Species Escherichia coli K-12 [TaxId:83333] [188673] (3 PDB entries)
    7. 1821831Species Escherichia coli [TaxId:562] [51575] (15 PDB entries)
    8. 1821862Species Methanocaldococcus jannaschii [TaxId:243232] [188258] (1 PDB entry)
    9. 1821867Species Mycobacterium tuberculosis [TaxId:1773] [141831] (1 PDB entry)
      Uniprot P63945 5-300
    10. 1821876Species Pseudomonas aeruginosa [TaxId:208964] [189575] (2 PDB entries)
    11. 1821881Species Pseudomonas aeruginosa [TaxId:287] [189992] (1 PDB entry)
    12. 1821884Species Thermotoga maritima [TaxId:2336] [102090] (1 PDB entry)
  6. 1821887Fructose-1,6-bisphosphate aldolase [51576] (11 species)
    1. 1821888Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [51579] (1 PDB entry)
    2. 1821893Species Human (Homo sapiens) [TaxId:9606] [254964] (2 PDB entries)
    3. 1821909Species Human (Homo sapiens), brain isozyme [TaxId:9606] [141834] (1 PDB entry)
      Uniprot P09972 2-343
    4. 1821911Species Human (Homo sapiens), liver isozyme [TaxId:9606] [51578] (2 PDB entries)
    5. 1821931Species Human (Homo sapiens), muscle isozyme [TaxId:9606] [51577] (3 PDB entries)
    6. 1821935Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [51581] (1 PDB entry)
    7. 1821938Species Plasmodium yoelii yoelii [TaxId:73239] [141833] (1 PDB entry)
      Uniprot Q7RMC9 3-258
    8. 1821941Species Rabbit (Oryctolagus cuniculus), liver isozyme [TaxId:9986] [63920] (1 PDB entry)
    9. 1821946Species Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:9986] [51580] (25 PDB entries)
    10. Species Trypanosome (Leishmania mexicana) [TaxId:5665] [51582] (1 PDB entry)
    11. 1822049Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [51583] (1 PDB entry)
  7. 1822051Hypothetical protein HI0047 [102092] (1 species)
    putative KHG/KDPG aldolase
  8. 1822059KDPG aldolase [51584] (3 species)
    1. 1822060Species Escherichia coli [TaxId:562] [51585] (7 PDB entries)
    2. 1822080Species Pseudomonas putida [TaxId:303] [102091] (1 PDB entry)
    3. 1822082Species Thermotoga maritima [TaxId:2336] [110357] (1 PDB entry)
      Uniprot Q9WXS1
  9. 1822086N-acetylneuraminate lyase [51571] (2 species)
    1. 1822087Species Escherichia coli [TaxId:562] [51572] (4 PDB entries)
    2. 1822104Species Haemophilus influenzae [TaxId:727] [51573] (6 PDB entries)
  10. 1822123Putative aldolase YihT [110358] (1 species)
  11. 1822126Transaldolase [51588] (3 species)
    probably related to class I aldolases by a circular permutation
    1. 1822127Species Escherichia coli [TaxId:562] [51589] (7 PDB entries)
    2. 1822142Species Human (Homo sapiens) [TaxId:9606] [51590] (1 PDB entry)
    3. 1822145Species Mouse (Mus musculus) [TaxId:10090] [141835] (1 PDB entry)
      Uniprot Q93092 13-331
  12. 1822147Type I 3-dehydroquinate dehydratase [51586] (4 species)
    1. 1822148Species Salmonella enterica [TaxId:90370] [260153] (3 PDB entries)
    2. 1822156Species Salmonella typhi [TaxId:90370] [51587] (3 PDB entries)
    3. 1822164Species Staphylococcus aureus [TaxId:1280] [117378] (2 PDB entries)
      Uniprot Q6GII7
    4. 1822169Species Streptococcus pyogenes [TaxId:301447] [225216] (1 PDB entry)
  13. 1822171automated matches [190095] (20 species)
    not a true protein
    1. 1822172Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [189130] (1 PDB entry)
    2. 1822177Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188824] (1 PDB entry)
    3. 1822180Species Escherichia coli K-12 [TaxId:83333] [225841] (10 PDB entries)
    4. 1822219Species Escherichia coli [TaxId:469008] [189446] (6 PDB entries)
    5. 1822239Species Escherichia coli [TaxId:562] [189174] (6 PDB entries)
    6. 1822259Species Escherichia coli [TaxId:83333] [277890] (6 PDB entries)
    7. 1822314Species Human (Homo sapiens) [TaxId:9606] [254965] (1 PDB entry)
    8. 1822326Species Mouse (Mus musculus) [TaxId:10090] [187041] (2 PDB entries)
    9. 1822330Species Mycobacterium tuberculosis [TaxId:1773] [189568] (1 PDB entry)
    10. 1822337Species Oleispira antarctica [TaxId:188908] [189374] (1 PDB entry)
    11. 1822339Species Pasteurella multocida [TaxId:1169409] [228765] (5 PDB entries)
    12. 1822360Species Pseudomonas aeruginosa [TaxId:208964] [189421] (1 PDB entry)
    13. 1822363Species Pyrobaculum aerophilum [TaxId:13773] [187314] (1 PDB entry)
    14. 1822365Species Salmonella enterica [TaxId:99287] [189300] (4 PDB entries)
    15. 1822377Species Salmonella typhimurium [TaxId:90371] [189452] (5 PDB entries)
    16. 1822389Species Sulfolobus solfataricus [TaxId:2287] [195677] (1 PDB entry)
    17. 1822392Species Thermoplasma acidophilum [TaxId:273075] [189712] (6 PDB entries)
    18. 1822423Species Thermoproteus tenax [TaxId:2271] [186816] (1 PDB entry)
    19. 1822433Species Thermotoga maritima [TaxId:2336] [186818] (3 PDB entries)
    20. 1822450Species Toxoplasma gondii [TaxId:5811] [259539] (2 PDB entries)

More info for Family c.1.10.1: Class I aldolase

Timeline for Family c.1.10.1: Class I aldolase: