Lineage for Family a.1.1.2: Globins

  1. Root: SCOPe 2.05
  2. 1715731Class a: All alpha proteins [46456] (286 folds)
  3. 1715732Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1715733Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1715807Family a.1.1.2: Globins [46463] (27 proteins)
    Heme-binding protein

Proteins:

  1. 1715808Ascaris hemoglobin, domain 1 [46520] (1 species)
  2. 1715811Bacterial dimeric hemoglobin [46526] (1 species)
  3. 1715825Chimeric hemoglobin beta-alpha [46516] (1 species)
  4. 1715831Cytoglobin [109626] (1 species)
  5. 1715847Dehaloperoxidase [46530] (1 species)
  6. 1715911Erythrocruorin [46479] (1 species)
  7. 1715917Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 [116758] (1 species)
  8. 1715925Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B) [116754] (1 species)
  9. 1715933Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) [116756] (1 species)
  10. 1715941Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A) [116752] (1 species)
  11. 1715949Flavohemoglobin, N-terminal domain [46528] (2 species)
    1. 1715950Species Alcaligenes eutrophus [TaxId:106590] [46529] (1 PDB entry)
    2. 1715953Species Escherichia coli [TaxId:562] [74663] (1 PDB entry)
  12. 1715955Glycera globin [46467] (1 species)
  13. 1715965Hagfish hemoglobin [68941] (1 species)
  14. 1715973Heme-based aerotactic transducer HemAT, sensor domain [100980] (1 species)
  15. 1715979Hemoglobin [46522] (1 species)
  16. 1715983Hemoglobin I [46464] (2 species)
    1. 1715984Species Ark clam (Scapharca inaequivalvis) [TaxId:6561] [46465] (36 PDB entries)
    2. 1716071Species Clam (Lucina pectinata) [TaxId:244486] [46466] (4 PDB entries)
  17. 1716076Hemoglobin, alpha-chain [46486] (23 species)
    1. 1716077Species Aldabra giant tortoise (Geochelone gigantea) [TaxId:167804] [100976] (3 PDB entries)
      Uniprot P83134
    2. 1716081Species Antarctic fish (Trematomus newnesi) [TaxId:35730] [46497] (6 PDB entries)
    3. 1716091Species Bar-headed goose (Anser indicus) [TaxId:8846] [46493] (3 PDB entries)
    4. 1716098Species Bluefin tuna (Thunnus thynnus) [TaxId:8237] [109623] (3 PDB entries)
      Uniprot Q8AYM0
    5. 1716105Species Cartilaginous fish akaei (Dasyatis akajei) [TaxId:31902] [46496] (2 PDB entries)
    6. 1716108Species Chicken (Gallus gallus) [TaxId:9031] [46492] (1 PDB entry)
    7. 1716111Species Cow (Bos taurus) [TaxId:9913] [46490] (11 PDB entries)
    8. 1716134Species Deer (Odocoileus virginianus) [TaxId:9874] [46489] (1 PDB entry)
    9. 1716137Species Dog (Canis familiaris) [TaxId:9615] [189534] (2 PDB entries)
    10. 1716141Species Donkey (Equus asinus) [TaxId:9793] [158217] (1 PDB entry)
      Uniprot P01959 1-141
      beta-chain sequences of donkey and horse hemoglobins are identical
    11. 1716143Species Dusicyon thous [TaxId:9620] [186966] (1 PDB entry)
    12. 1716147Species Emerald rockcod (Pagothenia bernacchii) [TaxId:40690] [46495] (12 PDB entries)
    13. 1716167Species Fish (Leiostomus xanthurus) [TaxId:59837] [46498] (1 PDB entry)
    14. 1716169Species Graylag goose (Anser anser) [TaxId:8843] [68938] (1 PDB entry)
    15. 1716172Species Horse (Equus caballus) [TaxId:9796] [46488] (16 PDB entries)
    16. 1716194Species Houndshark (Mustelus griseus) [TaxId:89020] [46499] (2 PDB entries)
    17. 1716199Species Human (Homo sapiens) [TaxId:9606] [46487] (232 PDB entries)
      Uniprot P69905 P01922 P01934 P01935
    18. 1716663Species Human (Homo sapiens), zeta isoform [TaxId:9606] [68937] (2 PDB entries)
    19. 1716669Species Maned wolf (Chrysocyon brachyurus) [TaxId:68728] [63440] (1 PDB entry)
    20. 1716672Species Peromyscus maniculatus [TaxId:10042] [224840] (1 PDB entry)
    21. 1716674Species Pig (Sus scrofa) [TaxId:9823] [46491] (3 PDB entries)
    22. 1716683Species Rainbow trout (Oncorhynchus mykiss) [TaxId:8022] [46494] (2 PDB entries)
    23. 1716687Species Yellow perch (Perca flavescens) [TaxId:8167] [116749] (1 PDB entry)
      Uniprot P83270; 78% sequence identity
  18. 1716690Hemoglobin, beta-chain [46500] (24 species)
    1. 1716691Species Aldabra giant tortoise (Geochelone gigantea) [TaxId:167804] [100977] (3 PDB entries)
      Uniprot P83133
    2. 1716695Species Antarctic fish (Trematomus newnesi) [TaxId:35730] [46513] (6 PDB entries)
    3. 1716705Species Bar-headed goose (Anser indicus) [TaxId:8846] [46509] (3 PDB entries)
    4. 1716712Species Bluefin tuna (Thunnus thynnus) [TaxId:8237] [109624] (3 PDB entries)
      Uniprot Q8AYM1
    5. 1716719Species Cartilaginous fish akaei (Dasyatis akajei) [TaxId:31902] [46512] (2 PDB entries)
    6. 1716722Species Chicken (Gallus gallus) [TaxId:9031] [46508] (1 PDB entry)
    7. 1716725Species Cow (Bos taurus) [TaxId:9913] [46506] (11 PDB entries)
    8. 1716748Species Deer (Odocoileus virginianus) [TaxId:9874] [46505] (1 PDB entry)
    9. 1716751Species Dog (Canis familiaris) [TaxId:9615] [158218] (3 PDB entries)
    10. 1716757Species Donkey (Equus asinus) [TaxId:9793] [158216] (1 PDB entry)
      beta-chain sequences of donkey and horse hemoglobins are identical
    11. 1716759Species Emerald rockcod (Pagothenia bernacchii) [TaxId:40690] [46511] (12 PDB entries)
    12. 1716779Species Fish (Leiostomus xanthurus) [TaxId:59837] [46514] (1 PDB entry)
    13. 1716781Species Graylag goose (Anser anser) [TaxId:8843] [68940] (1 PDB entry)
    14. 1716784Species Horse (Equus caballus) [TaxId:9796] [46504] (16 PDB entries)
    15. 1716806Species Houndshark (Mustelus griseus) [TaxId:89020] [46515] (2 PDB entries)
    16. 1716811Species Human (Homo sapiens) [TaxId:9606] [46501] (225 PDB entries)
      Uniprot P68871
    17. 1717262Species Human (Homo sapiens), delta-chain [TaxId:9606] [116750] (2 PDB entries)
      Uniprot P02042
    18. 1717267Species Human (Homo sapiens), embryonic gower II [TaxId:9606] [46503] (1 PDB entry)
    19. 1717270Species Human fetus (Homo sapiens), gamma-chain [TaxId:9606] [46502] (3 PDB entries)
    20. 1717277Species Maned wolf (Chrysocyon brachyurus) [TaxId:68728] [63441] (1 PDB entry)
    21. 1717280Species Mouse (Mus musculus) [TaxId:10090] [68939] (1 PDB entry)
    22. 1717283Species Pig (Sus scrofa) [TaxId:9823] [46507] (3 PDB entries)
    23. 1717292Species Rainbow trout (Oncorhynchus mykiss) [TaxId:8022] [46510] (2 PDB entries)
    24. 1717296Species Yellow perch (Perca flavescens) [TaxId:8167] [116751] (4 PDB entries)
      Uniprot P83273; 86% sequence identity
  19. 1717305Hemoglobin, different isoforms [46524] (1 species)
  20. 1717309Hypothetical protein PA3967 [109628] (1 species)
  21. 1717312Lamprey globin [46518] (2 species)
    1. 1717313Species Lamprey (Lampetra fluviatilis) [TaxId:7748] [88966] (1 PDB entry)
    2. 1717326Species Sea lamprey (Petromyzon marinus) [TaxId:7757] [46519] (4 PDB entries)
  22. 1717352Leghemoglobin [46481] (2 species)
    1. 1717353Species Soybean (Glycine max), isoform A [TaxId:3847] [46483] (2 PDB entries)
    2. 1717358Species Yellow lupine (Lupinus luteus) [TaxId:3873] [46482] (17 PDB entries)
  23. 1717376Myoglobin [46469] (9 species)
    1. 1717377Species Asian elephant (Elephas maximus) [TaxId:9783] [46476] (1 PDB entry)
    2. 1717379Species Common seal (Phoca vitulina) [TaxId:9720] [46472] (1 PDB entry)
    3. 1717381Species Horse (Equus caballus) [TaxId:9796] [46474] (80 PDB entries)
    4. 1717467Species Human (Homo sapiens) [TaxId:9606] [46475] (1 PDB entry)
    5. 1717469Species Loggerhead sea turtle (Caretta caretta) [TaxId:8467] [46477] (2 PDB entries)
    6. 1717472Species Pig (Sus scrofa) [TaxId:9823] [46473] (17 PDB entries)
    7. 1717506Species Slug sea hare (Aplysia limacina) [TaxId:6502] [46471] (7 PDB entries)
    8. 1717514Species Sperm whale (Physeter catodon) [TaxId:9755] [46470] (245 PDB entries)
      Uniprot P02185
    9. 1717761Species Yellowfin tuna (Thunnus albacares) [TaxId:8236] [46478] (1 PDB entry)
  24. 1717763Neuroglobin [100978] (2 species)
    1. 1717764Species Human (Homo sapiens) [TaxId:9606] [100979] (2 PDB entries)
    2. 1717771Species Mouse (Mus musculus) [TaxId:10090] [109625] (12 PDB entries)
      Uniprot Q9ER97
  25. 1717784Non-symbiotic plant hemoglobin [46484] (1 species)
  26. 1717792Trematode hemoglobin/myoglobin [63438] (1 species)
  27. 1717797automated matches [190359] (40 species)
    not a true protein
    1. 1717798Species Amphitrite ornata [TaxId:129555] [189339] (3 PDB entries)
    2. 1717805Species Ark clam (Scapharca inaequivalvis) [TaxId:6561] [187427] (31 PDB entries)
    3. 1717874Species Barley (Hordeum vulgare) [TaxId:4513] [187359] (1 PDB entry)
    4. 1717883Species Brycon cephalus [TaxId:126311] [188621] (1 PDB entry)
    5. 1717888Species Buffalo (Bubalus bubalis) [TaxId:89462] [188864] (1 PDB entry)
    6. 1717893Species Camel (Camelus dromedarius) [TaxId:9838] [189249] (1 PDB entry)
    7. 1717898Species Cat (Felis catus) [TaxId:9685] [188888] (4 PDB entries)
    8. 1717923Species Coturnix japonica [TaxId:93934] [189557] (1 PDB entry)
    9. 1717928Species Domestic pigeon (Columba livia) [TaxId:8932] [188616] (2 PDB entries)
    10. 1717941Species Dromaius novaehollandiae [TaxId:8790] [258618] (1 PDB entry)
    11. 1717946Species Duck (Anas platyrhynchos) [TaxId:8839] [189063] (1 PDB entry)
    12. 1717949Species Dusicyon thous [TaxId:9620] [187446] (1 PDB entry)
    13. 1717951Species Eleginops maclovinus [TaxId:56733] [193401] (1 PDB entry)
    14. 1717956Species Escherichia coli [TaxId:562] [196657] (1 PDB entry)
    15. 1717959Species Glossoscolex paulistus [TaxId:1046353] [273742] (1 PDB entry)
    16. 1717961Species Goat (Capra hircus) [TaxId:9925] [188635] (3 PDB entries)
    17. 1717978Species Guinea pig (Cavia porcellus) [TaxId:10141] [189281] (2 PDB entries)
    18. 1717983Species Helogale parvula [TaxId:210647] [277372] (2 PDB entries)
    19. 1717990Species Human (Homo sapiens) [TaxId:9606] [188371] (5 PDB entries)
    20. 1718007Species Isurus oxyrinchus [TaxId:57983] [189618] (1 PDB entry)
    21. 1718012Species Lepus europaeus [TaxId:9983] [189630] (1 PDB entry)
    22. 1718017Species Maize (Zea mays) [TaxId:76912] [188014] (1 PDB entry)
    23. 1718022Species Mammuthus primigenius [TaxId:37349] [194337] (3 PDB entries)
    24. 1718031Species Mouse (Mus musculus) [TaxId:10090] [187190] (2 PDB entries)
    25. 1718037Species Norway rat (Rattus norvegicus) [TaxId:10116] [188924] (2 PDB entries)
    26. 1718044Species Parasponia andersonii [TaxId:3476] [193708] (1 PDB entry)
    27. 1718047Species Peromyscus maniculatus [TaxId:10042] [196779] (1 PDB entry)
    28. 1718049Species Podocnemis unifilis [TaxId:227871] [189922] (2 PDB entries)
    29. 1718054Species Psittacula krameri [TaxId:9228] [255724] (1 PDB entry)
    30. 1718057Species Pteropus giganteus [TaxId:143291] [188768] (1 PDB entry)
    31. 1718060Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [188592] (1 PDB entry)
    32. 1718065Species Rainbow trout (Oncorhynchus mykiss) [TaxId:8022] [188309] (2 PDB entries)
    33. 1718074Species Sheep (Ovis aries) [TaxId:9940] [188522] (1 PDB entry)
    34. 1718079Species Sperm whale (Physeter catodon) [TaxId:9755] [188226] (4 PDB entries)
    35. 1718084Species Struthio camelus [TaxId:8801] [188835] (1 PDB entry)
    36. 1718089Species Thunnus atlanticus [TaxId:48168] [187921] (8 PDB entries)
    37. 1718098Species Thunnus orientalis [TaxId:8238] [187933] (1 PDB entry)
    38. 1718100Species Trema tomentosa [TaxId:3480] [196352] (1 PDB entry)
    39. 1718103Species Turkey (Meleagris gallopavo) [TaxId:9103] [189160] (2 PDB entries)
    40. 1718112Species Yellow perch (Perca flavescens) [TaxId:8167] [188574] (3 PDB entries)

More info for Family a.1.1.2: Globins

Timeline for Family a.1.1.2: Globins: