Lineage for d3onyb_ (3ony B:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2822534Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2822535Protein automated matches [190988] (51 species)
    not a true protein
  7. 2822920Species Norwalk virus [TaxId:11983] [419865] (22 PDB entries)
  8. 2822947Domain d3onyb_: 3ony B: [413327]
    Other proteins in same PDB: d3onya2
    automated match to d5or7a_
    complexed with edo, fuc

Details for d3onyb_

PDB Entry: 3ony (more details), 1.85 Å

PDB Description: crystal structure of p domain from norwalk virus strain vietnam 026 in complex with fucose
PDB Compounds: (B:) capsid protein

SCOPe Domain Sequences for d3onyb_:

Sequence, based on SEQRES records: (download)

>d3onyb_ b.121.4.0 (B:) automated matches {Norwalk virus [TaxId: 11983]}
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvda
nshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqe
wvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfr
fdswvnqfytlapm

Sequence, based on observed residues (ATOM records): (download)

>d3onyb_ b.121.4.0 (B:) automated matches {Norwalk virus [TaxId: 11983]}
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntntvpge
gnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshfd
qwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqhl
yqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdswv
nqfytlapm

SCOPe Domain Coordinates for d3onyb_:

Click to download the PDB-style file with coordinates for d3onyb_.
(The format of our PDB-style files is described here.)

Timeline for d3onyb_:

  • d3onyb_ is new in SCOPe 2.08-stable