SCOPe 2.08: Domain d6r4ve_: 6r4v E:

Lineage for d6r4ve_ (6r4v E:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.1: Isoprenyl diphosphate synthases [48577] (4 proteins)

6. Protein Geranylgeranyl pyrophosphate synthetase [158813] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [158814] (5 PDB entries)
   Uniprot O95749 6-296

8. Domain d6r4ve_: 6r4v E: [374483]
   automated match to d2q80a1
   complexed with bfq, gol, mg

Details for d6r4ve_

PDB Entry: 6r4v, 2.2 Å

PDB Description: crystal structure of human geranylgeranyl diphosphate synthase bound to ibandronate

PDB Compounds: (E:) Geranylgeranyl pyrophosphate synthase

SCOPe Domain Sequences for d6r4ve_:

Sequence, based on SEQRES records:

>d6r4ve_ a.128.1.1 (E:) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
tqetvqrillepykyllqlpgkqvrtklsqafnhwlkvpedklqiiievtemlhnaslli
ddiednsklrrgfpvahsiygipsvinsanyvyflglekvltldhqdavklftrqllelh
qgqgldiywrdnytcpteeeykamvlqktgglfglavglmqlfsdykedlkpllntlglf
fqirddyanlhskeysenksfcedltegkfsfptihaiwsrpestqvqnilrqrtenidi
kkycvhyledvgsfeytrntlkeleakaykqidarggnpelvalvkhlskmfk

Sequence, based on observed residues (ATOM records):

>d6r4ve_ a.128.1.1 (E:) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
tqetvqrillepykyllqlpgkqvrtklsqafnhwlkvpedklqiiievtemlhnaslli
ddiednsklrrgfpvahsiygipsvinsanyvyflglekvltldhqdavklftrqllelh
qgqgldiywrdnytcpteeeykamvlqktgglfglavglmqlfsdykedlkpllntlglf
fqirddyanlhsnksfcedltegkfsfptihaiwsrpestqvqnilrqrtenidikkycv
hyledvgsfeytrntlkeleakaykqidarggnpelvalvkhlskmfk

Timeline for d6r4ve_:

• d6r4ve_ first appeared in SCOPe 2.07