SCOPe 2.07: Domain d4cr2l2: 4cr2 L:164-427

Lineage for d4cr2l2 (4cr2 L:164-427)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.20: Extended AAA-ATPase domain [81269] (42 proteins)
   fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

6. Protein Proteasome regulatory particle base subunit Rpt4, C-terminal domain [346078] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346297] (1 PDB entry)

8. Domain d4cr2l2: 4cr2 L:164-427 [345179]
   Other proteins in same PDB: d4cr21_, d4cr22_, d4cr23_, d4cr24_, d4cr25_, d4cr26_, d4cr27_, d4cr2a_, d4cr2b_, d4cr2c_, d4cr2d_, d4cr2e_, d4cr2f_, d4cr2g_, d4cr2h1, d4cr2h2, d4cr2h3, d4cr2i1, d4cr2i2, d4cr2i3, d4cr2j1, d4cr2j2, d4cr2j3, d4cr2k1, d4cr2k2, d4cr2k3, d4cr2l1, d4cr2l3, d4cr2m1, d4cr2m2, d4cr2m3, d4cr2n1, d4cr2n2, d4cr2n3, d4cr2o1, d4cr2o2, d4cr2p1, d4cr2p2, d4cr2q1, d4cr2q2, d4cr2r1, d4cr2r2, d4cr2s1, d4cr2s2, d4cr2t1, d4cr2t2, d4cr2u1, d4cr2u2, d4cr2v1, d4cr2v2, d4cr2w_, d4cr2x_, d4cr2y_, d4cr2z1, d4cr2z2, d4cr2z3

Details for d4cr2l2

PDB Entry: 4cr2, 7.7 Å

PDB Description: deep classification of a large cryo-em dataset defines the conformational landscape of the 26s proteasome

PDB Compounds: (L:) 26s protease subunit rpt4

SCOPe Domain Sequences for d4cr2l2:

Sequence; same for both SEQRES and ATOM records:

>d4cr2l2 c.37.1.20 (L:164-427) Proteasome regulatory particle base subunit Rpt4, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
dplvynmtsfeqgeitfdgigglteqirelrevielplknpeifqrvgikppkgvllygp
pgtgktllakavaatiganfifspasgivdkyigesariiremfayakehepciifmdev
daiggrrfsegtsadreiqrtlmelltqmdgfdnlgqtkiimatnrpdtldpallrpgrl
drkveiplpneagrleifkihtakvkktgefdfeaavkmsdgfngadirncateagffai
rddrdhinpddlmkavrkvaevkk

Timeline for d4cr2l2:

• d4cr2l2 is new in SCOPe 2.07-stable
  
• d4cr2l2 appears in the current release, SCOPe 2.08