SCOPe 2.08: Domain d5dmxa2: 5dmx A:99-305

Lineage for d5dmxa2 (5dmx A:99-305)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.0: automated matches [227184] (1 protein)
   not a true family

6. Protein automated matches [226904] (39 species)
   not a true protein

7. Species Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)

8. Domain d5dmxa2: 5dmx A:99-305 [344197]
   Other proteins in same PDB: d5dmxa1, d5dmxb1, d5dmxc1, d5dmxd1, d5dmxe1, d5dmxf1

Details for d5dmxa2

PDB Entry: 5dmx, 2.81 Å

PDB Description: crystal structure of d-alanine-d-alanine ligase from acinetobacter baumannii, space group p212121

PDB Compounds: (A:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d5dmxa2:

Sequence, based on SEQRES records:

>d5dmxa2 d.142.1.0 (A:99-305) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriitketdldsviaelglpviikpvhegssvgmskvekaed
faaaiekatqhdavvmaekwitgreftisflngqplpvirlqppadvafydyeakyqrnd
veygipcglseteekklqalclrafqavgaegwgridamqdeqgnfwllevntvpgmtsh
slvpkaakavgysfdelcvaileqtle

Sequence, based on observed residues (ATOM records):

>d5dmxa2 d.142.1.0 (A:99-305) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriivvmaekwitgreftisflngqplpvirlqygipcglse
teekklqalclrafqavgaegwgridamqdeqgnfwllevntvpgmtshslvpkaakavg
ysfdelcvaileqtle

Timeline for d5dmxa2:

• d5dmxa2 first appeared in SCOPe 2.07