Lineage for d5dmxf2 (5dmx F:99-305)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2541368Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2541369Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2541793Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2541794Protein automated matches [226904] (37 species)
    not a true protein
  7. 2541795Species Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)
  8. 2541807Domain d5dmxf2: 5dmx F:99-305 [344201]
    Other proteins in same PDB: d5dmxa1, d5dmxb1, d5dmxc1, d5dmxd1, d5dmxe1, d5dmxf1

Details for d5dmxf2

PDB Entry: 5dmx (more details), 2.81 Å

PDB Description: crystal structure of d-alanine-d-alanine ligase from acinetobacter baumannii, space group p212121
PDB Compounds: (F:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d5dmxf2:

Sequence, based on SEQRES records: (download)

>d5dmxf2 d.142.1.0 (F:99-305) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriitketdldsviaelglpviikpvhegssvgmskvekaed
faaaiekatqhdavvmaekwitgreftisflngqplpvirlqppadvafydyeakyqrnd
veygipcglseteekklqalclrafqavgaegwgridamqdeqgnfwllevntvpgmtsh
slvpkaakavgysfdelcvaileqtle

Sequence, based on observed residues (ATOM records): (download)

>d5dmxf2 d.142.1.0 (F:99-305) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyrildsviaelglpaekwitgreftisflngqplpvirlqyg
ipcglseteekklqalclrafqavgaegwgridamqdeqgnfwllevntvpgmtshslvp
kaakavgysfdelcvaileqtle

SCOPe Domain Coordinates for d5dmxf2:

Click to download the PDB-style file with coordinates for d5dmxf2.
(The format of our PDB-style files is described here.)

Timeline for d5dmxf2:

  • d5dmxf2 is new in SCOPe 2.07-stable