SCOPe 2.08: Domain d1dgsb2: 1dgs B:2315-2400

Lineage for d1dgsb2 (1dgs B:2315-2400)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.40: OB-fold [50198] (17 superfamilies)
   barrel, closed or partly opened n=5, S=10 or S=8; greek-key

4. Superfamily b.40.4: Nucleic acid-binding proteins [50249] (18 families)

5. Family b.40.4.6: DNA ligase/mRNA capping enzyme postcatalytic domain [50307] (5 proteins)

6. Protein NAD+-dependent DNA ligase [50313] (1 species)

7. Species Thermus filiformis [TaxId:276] [50314] (3 PDB entries)

8. Domain d1dgsb2: 1dgs B:2315-2400 [25366]
   Other proteins in same PDB: d1dgsa1, d1dgsa3, d1dgsb1, d1dgsb3
   protein/DNA complex; complexed with amp, zn

Details for d1dgsb2

PDB Entry: 1dgs, 2.9 Å

PDB Description: crystal structure of nad+-dependent dna ligase from t. filiformis

PDB Compounds: (B:) DNA ligase

SCOPe Domain Sequences for d1dgsb2:

Sequence; same for both SEQRES and ATOM records:

>d1dgsb2 b.40.4.6 (B:2315-2400) NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
aeeketrlldvvfqvgrtgrvtpvgvlepvfiegsevsrvtlhnesyieeldirigdwvl
vhkaggvipevlrvlkerrtgkerpi

Timeline for d1dgsb2:

• d1dgsb2 first appeared (with stable ids) in SCOP 1.55
  
• d1dgsb2 appears in SCOPe 2.07